YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|214000218
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-3139
Length:	252 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|214000218.

Description	E-value	Query Range	Subject Range
gi\|145408869, gi... - gi\|82499630\|ref\|ZP_00885070.1\| ATPase, E1-E2 type:Copper ion-binding:Copper-translocating P-type ATP...	2.0E-48	[1..252]	[495..762]
GPH_SALPA - Phosphoglycolate phosphatase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=SPA3347 PE=3 S... GPH_SALPA - Phosphoglycolate phosphatase OS=Salmonella paratyphi A GN=SPA3347 PE=3 SV=1 gi\|197095805, gi... - gi\|197364328\|ref\|YP_002143965.1\| phosphoglycolate phosphatase [Salmonella enterica subsp. enterica s...	9.0E-48	[1..251]	[1..251]
GPH_SALTI - Phosphoglycolate phosphatase OS=Salmonella typhi GN=gph PE=3 SV=1 GPH_SALTI - Phosphoglycolate phosphatase OS=Salmonella typhi GN=gph PE=3 SV=1 gi\|16762805 - gi\|16762805\|ref\|NP_458422.1\| phosphoglycolate phosphatase [Salmonella enterica subsp. enterica serov...	2.0E-47	[1..251]	[1..251]
GPH_SALTY - Phosphoglycolate phosphatase OS=Salmonella typhimurium GN=gph PE=3 SV=1 GPH_SALTY - Phosphoglycolate phosphatase OS=Salmonella typhimurium GN=gph PE=3 SV=1 gi\|167994587, gi... - gi\|205327601\|gb\|EDZ14365.1\| phosphoglycolate phosphatase [Salmonella enterica subsp. enterica serova... lcl\|NC_016856.1_... - [gene=gph] [protein=phosphoglycolate phosphatase] [protein_id=YP_005239680.1] [location=complement(3... GPH_SALTY - Phosphoglycolate phosphatase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=gph ...	2.0E-47	[1..251]	[1..251]
GPH_SALCH - Phosphoglycolate phosphatase OS=Salmonella choleraesuis (strain SC-B67) GN=SCH_3414 PE=3 SV=1 GPH_SALCH - Phosphoglycolate phosphatase OS=Salmonella choleraesuis GN=SCH_3414 PE=3 SV=1 gi\|224469804, gi... - gi\|224585276\|ref\|YP_002639075.1\| phosphoglycolate phosphatase [Salmonella enterica subsp. enterica s... GPH_SALCH - Phosphoglycolate phosphatase OS=Salmonella choleraesuis GN=SCH_3414 PE=3 SV=1	4.0E-47	[1..251]	[1..251]
gi\|158320102, gi... - gi\|158320102\|ref\|YP_001512609.1\| heavy metal translocating P-type ATPase [Alkaliphilus oremlandii Oh...	4.0E-47	[1..252]	[490..758]
gi\|76151977 - gi\|76151977\|gb\|ABA39707.1\| TcrA [Enterococcus faecium]	4.0E-47	[1..252]	[485..753]
gi\|89897256, gi\|... - gi\|89897256\|ref\|YP_520743.1\| hypothetical protein DSY4510 [Desulfitobacterium hafniense Y51], gi\|893...	2.0E-46	[1..252]	[494..762]
gi\|75516147, gi\|... - gi\|75516147\|ref\|ZP_00738265.1\| COG0546: Predicted phosphatases [Escherichia coli 53638], gi\|18849334... gi\|157162861, gi... - gi\|75197316\|ref\|ZP_00707386.1\| COG0546: Predicted phosphatases [Escherichia coli HS], gi\|157162861\|r... gi\|226839055, gi... - gi\|254038549\|ref\|ZP_04872605.1\| phosphoglycolate phosphatase [Escherichia sp. 1_1_43], gi\|226839055\|... gi\|209756690, gi... - pir\|\|C91157 phosphoglycolate phosphatase [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|254795299, gi... - gi\|254795299\|ref\|YP_003080136.1\| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. TW14359... gi\|209397865, gi... - gi\|209397865\|ref\|YP_002272819.1\| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. EC4115]... gi\|15803888, gi\|... - gi\|15803888\|ref\|NP_289924.1\| phosphoglycolate phosphatase [Escherichia coli O157:H7 EDL933], gi\|1251... gi\|208741353, gi... - gi\|208821230\|ref\|ZP_03261550.1\| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. EC4042],... gi\|217325172, gi... - gi\|217325172\|ref\|ZP_03441256.1\| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. TW14588]... gi\|124500814, gi... - gi\|124528159\|ref\|ZP_01699492.1\| phosphoglycolate phosphatase [Escherichia coli B], gi\|124500814\|gb\|E... gi\|168779465, gi... - gi\|189002264\|gb\|EDU71250.1\| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. EC4076], gi\|... gi\|168772727, gi... - gi\|187771456\|gb\|EDU35300.1\| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. EC4196], gi\|... gi\|168797152, gi... - gi\|189380127\|gb\|EDU98543.1\| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. EC508], gi\|1... gi\|168785186, gi... - gi\|189374428\|gb\|EDU92844.1\| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. EC869], gi\|1... gi\|195934873 - gi\|195934873\|ref\|ZP_03080255.1\| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. EC4024] GPH_ECO57 - Phosphoglycolate phosphatase OS=Escherichia coli O157:H7 GN=gph PE=3 SV=1 gi\|15833481, gi\|... - gi\|15833481\|ref\|NP_312254.1\| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|170018379, gi... - gi\|170018379\|ref\|YP_001723333.1\| phosphoglycolate phosphatase [Escherichia coli ATCC 8739], gi\|16975... gi\|208814054, gi... - gi\|208814054\|ref\|ZP_03255383.1\| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. EC4045],... gi\|208727293, gi... - gi\|208807492\|ref\|ZP_03249829.1\| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. EC4206],... gi\|189359166, gi... - gi\|189359166\|gb\|EDU77585.1\| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. EC4401], gi\|... gi\|168751804, gi... - gi\|188014205\|gb\|EDU52327.1\| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. EC4113], gi\|... gi\|189364353, gi... - gi\|189364353\|gb\|EDU82772.1\| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. EC4486], gi\|... gi\|168759406, gi... - gi\|189369601\|gb\|EDU88017.1\| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. EC4501], gi\|...	3.0E-46	[1..251]	[1..251]
gi\|218362698, gi... - gi\|218555930\|ref\|YP_002388843.1\| phosphoglycolate phosphatase [Escherichia coli IAI1], gi\|218362698\|... gi\|192957860, gi... - gi\|75236986\|ref\|ZP_00721042.1\| COG0546: Predicted phosphatases [Escherichia coli E110019], gi\|193068...	5.0E-46	[1..251]	[1..251]

Back

Predicted Domain #1

Region A:
Residues: [1-252]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKLQNIRGV AFDLDGTLVD SAPGLAAAVD MALYALELPV AGEERVITWI GNGADVLMER  60
   61 ALTWASQERA TLRKTMGKPP VDEDIPAEEQ VRILRKLFDR YYGEVAEEGT FLFPHVADTL 120
  121 GALHASGLSL GLVTNKPTPF VAPLLESLDI AKYFSVVIGG DDVQNKKPHP EPLLLVASRL 180
  181 GMTPEQMLFV GDSRNDIQAA KAAGCPSVGL TYGYNYGEVI ALSEPDVIYD SFNDLLPALG 240
  241 LPHSDNQEIK ND

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.39794
Match:	2hszA
Description:	No description for 2hszA was found.

Predicted functions:

Term	Confidence	Notes
phosphatase activity	4.95181073884363	bayes_pls_golite062009
phosphoric ester hydrolase activity	4.77239634899576	bayes_pls_golite062009
hydrolase activity	4.28050357117094	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	4.03655952210286	bayes_pls_golite062009
phosphoprotein phosphatase activity	2.04527248780903	bayes_pls_golite062009
catalytic activity	1.92340854382984	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: