YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|194179392, gi...
Organism: Drosophila yakuba
Length: 195 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194179392, gi....

Description E-value Query
Range		 Subject
Range
RR4_FUNHY - 30S ribosomal protein S4, chloroplastic OS=Funaria hygrometrica GN=rps4 PE=3 SV=1
 228.0 [0..11] [194..1]
RR4_PHYPA - 30S ribosomal protein S4, chloroplastic OS=Physcomitrella patens subsp. patens GN=rps4 PE=3 SV=1
RR4_PHYPA - 30S ribosomal protein S4, chloroplastic OS=Physcomitrella patens subsp. patens GN=rps4 PE=3 SV=1
 227.0 [0..11] [194..1]
gi|63191663 - gi|63191663|gb|AAY34793.1| small ribosomal protein subunit 4 [Dixonia thamnioides]
 226.0 [0..11] [194..1]
RR4_DIPFO - 30S ribosomal protein S4, chloroplastic OS=Diphyscium foliosum GN=rps4 PE=3 SV=1
 226.0 [0..11] [194..1]
gi|63191647 - gi|63191647|gb|AAY34785.1| small ribosomal protein subunit 4 [Leskeadelphus bolivianus]
 226.0 [0..14] [195..1]
gi|63101091 - gi|63101091|gb|AAY33170.1| small ribosomal protein 4 [Platyneuron laticostatum]
 226.0 [0..11] [194..1]
RR4_CYABU - 30S ribosomal protein S4, chloroplastic OS=Cyathophorum bulbosum GN=rps4 PE=3 SV=1
 226.0 [0..11] [194..1]
gi|63191649 - gi|63191649|gb|AAY34786.1| small ribosomal protein subunit 4 [Lindbergia brachyptera]
 225.0 [0..14] [195..1]
RR4_HYLSP - 30S ribosomal protein S4, chloroplastic OS=Hylocomium splendens GN=rps4 PE=3 SV=1
 225.0 [0..11] [194..1]
RR4_ARBAR - 30S ribosomal protein S4, chloroplastic OS=Arbusculohypopterygium arbuscula GN=rps4 PE=3 SV=1
 225.0 [0..11] [194..1]

Back

Predicted Domain #1
Region A:
Residues: [1-195] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNGRIPSVF SKTYVTPRRP YEKARLDQEL KIIGEYGLRN KREVWRVKYA LAKIRKAARE  60
   61 LLTLDEKDEK RLFQGNALLR RLVRIGVLDE SRMKLDYVLG LKIEDFLERR LQTQVFKLGL 120
  121 AKSIHHARVL IRQRHIRVRK QVVNIPSFVV RLDSQKHIDF SLKSPFGGGR PGRVKRKNLK 180
  181 KNQGGGGGAA EEEED

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.154902
Match: 1s1hD
Description: Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle