YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|209921165, gi...
Organism:	Escherichia coli SE11
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|209921165, gi....

Description	E-value	Query Range	Subject Range
gi\|25359058, gi\|... - pir\|\|F86053 hypothetical protein yidQ [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15804287, gi\|... - gi\|15804287\|ref\|NP_290326.1\| hypothetical protein Z5184 [Escherichia coli O157:H7 EDL933], gi\|125185... gi\|13364103, gi\|... - gi\|15833882\|ref\|NP_312655.1\| hypothetical protein ECs4628 [Escherichia coli O157:H7], gi\|13364103\|db... gi\|13364103, gi\|... - gi\|15833882\|ref\|NP_312655.1\| hypothetical protein ECs4628 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|73857481, gi\|... - gi\|74314004\|ref\|YP_312423.1\| hypothetical protein SSON_3639 [Shigella sonnei Ss046], gi\|73857481\|gb\|...	228.0	[0..1]	[135..1]
gi\|26110859, gi\|... - gi\|26250429\|ref\|NP_756469.1\| Hypothetical protein yidQ precursor [Escherichia coli CFT073], gi\|26110...	228.0	[0..1]	[135..1]
gi\|237703487, gi... - gi\|237703487\|ref\|ZP_04533968.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|91213211, gi\|... - gi\|91213211\|ref\|YP_543197.1\| hypothetical protein YidQ precursor [Escherichia coli UTI89], gi\|910747... gi\|115515088, gi... - gi\|117625964\|ref\|YP_859287.1\| hypothetical protein APECO1_2769 [Escherichia coli APEC O1], gi\|115515...	227.0	[0..1]	[135..1]
gi\|110644031, gi... - gi\|110644031\|ref\|YP_671761.1\| hypothetical protein ECP_3889 [Escherichia coli 536], gi\|110345623\|gb\|...	226.0	[0..1]	[135..1]
gi\|82546042, gi\|... - gi\|82546042\|ref\|YP_409989.1\| hypothetical protein SBO_3683 [Shigella boydii Sb227], gi\|81247453\|gb\|A...	226.0	[0..1]	[135..1]
gi\|82779222, gi\|... - gi\|82779222\|ref\|YP_405571.1\| hypothetical protein SDY_4174 [Shigella dysenteriae Sd197], gi\|81243370...	225.0	[0..1]	[135..1]
gi\|89110325, gi\|... - gi\|89110325\|ref\|AP_004105.1\| conserved outer membrane protein [Escherichia coli str. K-12 substr. W3... YIDQ_ECOLI - Hypothetical protein yidQ precursor - Escherichia coli gi\|253975540, gi... - gi\|254163639\|ref\|YP_003046747.1\| conserved outer membrane protein [Escherichia coli B str. REL606], ... EG11712 - DUF1375 family outer membrane protein / Probable lipoprotein, function unknown; Cys conserved gi\|254290389, gi... - gi\|254290389\|ref\|YP_003056137.1\| conserved outer membrane protein [Escherichia coli BL21(DE3)], gi\|2... EG11712 - DUF1375 family outer membrane protein / Probable lipoprotein, function unknown; Cys conserved gi\|161485826, gi... - ref\|NP_709510.1\| hypothetical protein SF3775 [Shigella flexneri 2a str. 301], gb\|AAN45217.1\| orf, c... YIDQ_SHIFL - Uncharacterized protein YidQ OS=Shigella flexneri GN=yidQ PE=3 SV=1 gi\|218363022, gi... - gi\|218556253\|ref\|YP_002389167.1\| hypothetical protein ECIAI1_3866 [Escherichia coli IAI1], gi\|218363... gi\|218358760, gi... - gi\|218551218\|ref\|YP_002385010.1\| hypothetical protein EFER_3983 [Escherichia fergusonii ATCC 35469],... gi\|218707334, gi... - gi\|218707334\|ref\|YP_002414853.1\| hypothetical protein ECUMN_4219 [Escherichia coli UMN026], gi\|21843... gi\|218354142, gi... - gi\|218697410\|ref\|YP_002405077.1\| hypothetical protein EC55989_4157 [Escherichia coli 55989], gi\|2183... gi\|169891027, gi... - gi\|170083192\|ref\|YP_001732512.1\| outer membrane protein [Escherichia coli str. K-12 substr. DH10B], ... gi\|161486397 - gi\|161486397\|ref\|NP_839169.2\| hypothetical protein S3995 [Shigella flexneri 2a str. 2457T] gi\|238860263, gi... - gi\|238902778\|ref\|YP_002928574.1\| conserved outer membrane protein [Escherichia coli BW2952], gi\|2388... gi\|251786954, gi... - gi\|251786954\|ref\|YP_003001258.1\| hypothetical protein B21_03515 [Escherichia coli BL21], gi\|24237922...	176.0	[0..26]	[135..1]
lcl\|NC_016856.1_... - [gene=yidQ] [protein=hypothetical protein] [protein_id=YP_005240076.1] [location=4024328..4024663] gi\|162139525 - gi\|162139525\|ref\|YP_218720.2\| hypothetical protein SC3733 [Salmonella enterica subsp. enterica serov... gi\|16767095, gi\|... - gi\|16767095\|ref\|NP_462710.1\| hypothetical protein STM3810 [Salmonella typhimurium LT2], gi\|16422382\|...	172.0	[0..25]	[133..1]
gi\|206710838, gi... - gi\|207859035\|ref\|YP_002245686.1\| hypothetical protein SEN3626 [Salmonella enterica subsp. enterica s... gi\|29144001, gi\|... - gi\|29144001\|ref\|NP_807343.1\| hypothetical protein t3708 [Salmonella enterica subsp. enterica serovar... gi\|16762512 - gi\|16762512\|ref\|NP_458129.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Typhi... gi\|16504817, gi\|... - gi\|25359062\|pir\|\|AD0961 probable lipoprotein STY3968 [imported] - Salmonella enterica subsp. enteric...	172.0	[0..25]	[133..1]
gi\|56129948, gi\|... - gi\|56415691\|ref\|YP_152766.1\| hypothetical protein SPA3660 [Salmonella enterica subsp. enterica serov... gi\|197364618, gi... - gi\|197364618\|ref\|YP_002144255.1\| hypothetical protein SSPA3418 [Salmonella enterica subsp. enterica ...	168.0	[0..25]	[133..1]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMLFSARDR YNSSGQHPRS TDEFIMIRNV LLAFMICSGM TLLGGCSSVM SHTGGKEGTY  60
   61 PGTRASATMI GDDETNWGTK SLAILDMPFT AVMDTLLLPW DVFRKDSSVR SRVEKSEANA 120
  121 QATNAVIPPA RMPDN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	46.769551
Match:	PF07119.3
Description:	No description for PF07119.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.697	N/A	N/A	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.414	N/A	N/A	a.118.8	TPR-like
View	Download	0.384	N/A	N/A	a.12.1	Kix domain of CBP (creb binding protein)
View	Download	0.383	N/A	N/A	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.377	N/A	N/A	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits