YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220945234, gi...
Organism:	synthetic construct
Length:	236 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220945234, gi....

Description	E-value	Query Range	Subject Range
EIF3J_DROER - Eukaryotic translation initiation factor 3 subunit J OS=Drosophila erecta GN=Adam PE=3 SV=1	242.0	[0..1]	[236..1]
gi\|27374365 - gi\|27374365\|gb\|AAO01104.1\| Adam-PA [Drosophila willistoni]	226.0	[0..1]	[236..1]
EIF3J_DROPE - Eukaryotic translation initiation factor 3 subunit J OS=Drosophila persimilis GN=Adam PE=3 SV=1 gi\|27374269 - gi\|27374269\|gb\|AAO01025.1\| Adam-PA [Drosophila pseudoobscura] EIF3J_DROPS - Eukaryotic translation initiation factor 3 subunit J OS=Drosophila pseudoobscura pseudoobscura GN=Ad...	213.0	[0..1]	[236..1]
EIF3J_RAT - Eukaryotic translation initiation factor 3 subunit J OS=Rattus norvegicus GN=Eif3j PE=1 SV=1	212.0	[0..2]	[236..12]
EI3JB_MOUSE - Eukaryotic translation initiation factor 3 subunit J-B OS=Mus musculus GN=Eif3j2 PE=1 SV=1	211.0	[0..2]	[236..16]
gi\|109080918 - gi\|109080918\|ref\|XP_001110624.1\| PREDICTED: similar to Eukaryotic translation initiation factor 3 su... gi\|10435304 - gi\|10435304\|dbj\|BAB14555.1\| unnamed protein product [Homo sapiens]	201.0	[0..2]	[236..11]
EIF3J_PONAB - Eukaryotic translation initiation factor 3 subunit J OS=Pongo abelii GN=EIF3J PE=2 SV=1 IF31_PONPY - Eukaryotic translation initiation factor 3 subunit 1 - Pongo pygmaeus (Orangutan)	201.0	[0..2]	[236..12]
gi\|4503511, gi\|3... - ref\|NP_003749.1\| eukaryotic translation initiation factor 3, subunit 1 alpha, 35kDa [Homo sapiens],...	200.0	[0..2]	[236..11]

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Predicted Domain #1

Region A:
Residues: [1-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADDWESAAD SEVVIRPTAA ASVNKWEGED EDEDIKDSWE DEEEKKDEEK PTKTEAPAKP  60
   61 KPNKALKAKL EQQALLEEEA EAKRLANLSP AEKLAEKLRL QKIQEASDLK HAQEAFGVTS 120
  121 TCGGLDAFNP ETKEEFKEFG ATLSWKVGQF RESEHFPQFV EDLVRSLCVN LSAADIKKVK 180
  181 MNVEILHSEK LKLEKANAKK PAGKGKGKVT LRTENDDIDG YQKYGNDFTE DYDDFM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits