YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213427422
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E02-1180
Length:	152 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213427422.

Description	E-value	Query Range	Subject Range
gi\|16502707, gi\|... - gi\|25512946\|pir\|\|AG0686 probable bacteriophage protein STY1618 [imported] - Salmonella enterica subs... gi\|16760412 - gi\|16760412\|ref\|NP_456029.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ser...	2.0E-48	[1..152]	[1..152]
gi\|75512140, gi\|... - gi\|75512140\|ref\|ZP_00734712.1\| COG5005: Mu-like prophage protein gpG [Escherichia coli 53638], gi\|18...	2.0E-48	[1..152]	[1..152]
gi\|75255744, gi\|... - gi\|75255744\|ref\|ZP_00727505.1\| COG5005: Mu-like prophage protein gpG [Escherichia coli E22], gi\|1930... gi\|218370285, gi... - gi\|218700299\|ref\|YP_002407928.1\| Putative phage virion morphogenesis (putative tail completion) prot... gi\|75228565, gi\|... - gi\|75228565\|ref\|ZP_00715199.1\| COG5005: Mu-like prophage protein gpG [Escherichia coli B7A], gi\|1911...	2.0E-48	[1..152]	[1..152]
gi\|85058816, gi\|... - gi\|85058816\|ref\|YP_454518.1\| hypothetical protein SG0838 [Sodalis glossinidius str. 'morsitans'], gi...	3.0E-47	[1..152]	[1..152]
gi\|36786747, gi\|... - gi\|37527313\|ref\|NP_930657.1\| hypothetical protein plu3439 [Photorhabdus luminescens subsp. laumondii...	3.0E-41	[7..152]	[4..149]
gi\|34497592, gi\|... - gi\|34497592\|ref\|NP_901807.1\| hypothetical protein CV_2137 [Chromobacterium violaceum ATCC 12472], gi...	9.0E-39	[5..150]	[3..148]
gi\|33147940, gi\|... - gi\|33151719\|ref\|NP_873072.1\| mu-like bacteriophage G protein 2 [Haemophilus ducreyi 35000HP], gi\|331...	2.0E-38	[6..147]	[1..138]
VPG2_HAEIN - Mu-like prophage FluMu G protein 2 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 /... VPG2_HAEIN - Mu-like prophage FluMu G protein 2 OS=Haemophilus influenzae GN=HI_1568 PE=4 SV=1	2.0E-38	[6..144]	[1..138]
gi\|50122643, gi\|... - gi\|50122643\|ref\|YP_051810.1\| putative phage-related protein [Pectobacterium atrosepticum SCRI1043], ...	3.0E-37	[7..152]	[4..149]
gi\|168826957, gi... - gi\|32029862\|ref\|ZP_00132816.1\| COG5005: Mu-like prophage protein gpG [Haemophilus somnus 2336], gi\|1...	5.0E-37	[6..144]	[1..161]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASDNLVSIT INDKSLRRSL RALDLAATDM EPAMRKIAGT LLAETQFNFL DEGRPGWMPS  60
   61 LAAEERDGQT LQDTGRLMGS VSTDHDDRQA VVGTNVVYGA IHQFGGKTGR NESVELPARP 120
  121 FLPVTGDGEL QPEVVIPILD TIVRHLESAA RR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	10.173925
Match:	PF05069.4
Description:	No description for PF05069.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits