YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|212013590, gi...
Organism:	Coxiella burnetii CbuK_Q154
Length:	207 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|212013590, gi....

Description	E-value	Query Range	Subject Range
gi\|46398651, gi\|... - gi\|46398651\|gb\|AAS92011.1\| IcmL protein [Legionella pneumophila], gi\|46398633\|gb\|AAS92002.1\| IcmL pr...	295.0	[0..1]	[203..1]
gi\|52840694, gi\|... - gi\|52840694\|ref\|YP_094493.1\| IcmL (DotI) [Legionella pneumophila subsp. pneumophila str. Philadelphi... gi\|22080758 - gi\|22080758\|emb\|CAD43145.1\| DotI protein [Legionella pneumophila serogroup 6] gi\|46398643, gi\|... - pir\|\|T18332 icmL protein - Legionella pneumophila, gi\|46398655\|gb\|AAS92013.1\| IcmL protein [Legionel... gi\|54296484, gi\|... - gi\|54296484\|ref\|YP_122853.1\| hypothetical protein lpp0515 [Legionella pneumophila str. Paris], gi\|53... gi\|53753274, gi\|... - gi\|54293442\|ref\|YP_125857.1\| hypothetical protein lpl0491 [Legionella pneumophila str. Lens], gi\|537... gi\|148282707, gi... - gi\|148360934\|ref\|YP_001252141.1\| IcmL (DotI) [Legionella pneumophila str. Corby], gi\|148282707\|gb\|AB...	294.0	[0..1]	[203..1]
gi\|154355782, gi... - gi\|94491747\|ref\|ZP_01298957.1\| hypothetical protein CburD_01001141 [Coxiella burnetii Dugway 7E9-12]... gi\|161763193, gi... - gi\|95928057\|ref\|ZP_01310808.1\| hypothetical protein CburR_01000221 [Coxiella burnetii RSA 331], gi\|1... gi\|212212034, gi... - gi\|212212034\|ref\|YP_002302970.1\| IcmL [Coxiella burnetii CbuG_Q212], gi\|212010444\|gb\|ACJ17825.1\| Icm... gi\|29542188, gi\|... - gi\|29654919\|ref\|NP_820611.1\| IcmL [Coxiella burnetii RSA 493], gi\|29542188\|gb\|AAO91125.1\| IcmL [Coxi...	288.0	[0..2]	[204..4]
gi\|18693266 - gi\|18693266\|gb\|AAL78307.1\|AF288617_4 DotI [Legionella longbeachae]	281.0	[0..1]	[203..1]
gi\|33414065, gi\|... - gi\|73853203\|ref\|YP_308699.1\| hypothetical protein LH0028 [Escherichia coli], gi\|33414065\|gb\|AAQ17620...	246.0	[0..23]	[204..42]
gi\|194447285, gi... - gi\|194447285\|ref\|YP_002043931.1\| TraM [Salmonella enterica subsp. enterica serovar Heidelberg str. S... gi\|32470232, gi\|... - gi\|32470232\|ref\|NP_863456.1\| hypothetical protein R64_p101 [Salmonella typhimurium], gi\|20521600\|dbj... gi\|4903116 - gi\|4903116\|dbj\|BAA78001.1\| traM [Plasmid R64] gi\|32470232\|ref\|... - traM [Salmonella typhimurium], hypothetical protein R64_p101 [Salmonella typhimurium] gi\|189360462, gi... - gi\|189360462\|gb\|EDU78881.1\| TraM [Escherichia coli O157:H7 str. EC4486], gi\|168770652\|ref\|ZP_0279565... gi\|189354662, gi... - gi\|189354662\|gb\|EDU73081.1\| TraM [Escherichia coli O157:H7 str. EC4401], gi\|168758552\|ref\|ZP_0278355...	245.0	[0..23]	[204..41]

Back

Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIDAEQLAL QKNNLYRDNY RRVMAFLLAS VVITVSLLAV LSYQIITTPK PAYYATTTTG  60
   61 RVIPLQSLDM PVVTNTYLLQ WAALATRAVY NLDFENYTKQ LDNASSYFTP TGWESLTNAM 120
  121 KSSGAIDSLK NNKLFMAGIV NGPAVILDQE VVHGRYSWRV QLPLLVTYTS ASIQQKAHFI 180
  181 ITMDIIRVPV IDAAKSIQIN RFSAVRG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.09
Match:	2bhmA
Description:	Crystal structure of VirB8 from Brucella suis
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits