YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220948198, gi...
Organism:	synthetic construct
Length:	226 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220948198, gi....

Description	E-value	Query Range	Subject Range
gi\|50736119 - gi\|50736119\|ref\|XP_419052.1\| PREDICTED: similar to HSPC177 [Gallus gallus]	201.0	[0..1]	[221..93]
gi\|74001062 - gi\|74001062\|ref\|XP_544799.2\| PREDICTED: similar to chromatin modifying protein 2B [Canis familiaris]	193.0	[0..1]	[219..581]
gi\|4680707 - gi\|4680707\|gb\|AAD27743.1\|AF132968_1 CGI-34 protein [Homo sapiens]	176.0	[0..1]	[222..1]
CHMP5_MOUSE - Charged multivesicular body protein 5 OS=Mus musculus GN=Chmp5 PE=1 SV=1 CHMP5_RAT - Charged multivesicular body protein 5 OS=Rattus norvegicus GN=Chmp5 PE=2 SV=1	175.0	[0..1]	[222..1]
gi\|109111233, gi... - gi\|109111233\|ref\|XP_001100473.1\| PREDICTED: chromatin modifying protein 5 isoform 3 [Macaca mulatta]... gi\|123999939, gi... - gi\|123999941\|gb\|ABM87479.1\| chromatin modifying protein 5 [synthetic construct], gi\|123999939\|gb\|ABM... CHMP5_PONPY - Charged multivesicular body protein 5 - Pongo pygmaeus (Orangutan) CHMP5_PONAB - Charged multivesicular body protein 5 OS=Pongo abelii GN=CHMP5 PE=2 SV=1 CHMP5 - chromatin modifying protein 5	173.0	[0..1]	[222..1]
gi\|54642086, gi\|... - gi\|54642086\|gb\|EAL30835.1\| GA19474 [Drosophila pseudoobscura pseudoobscura], gi\|125978599\|ref\|XP_001... gi\|125978599\|ref... - GA19474-PA [Drosophila pseudoobscura], GA19474 [Drosophila pseudoobscura pseudoobscura]	167.0	[0..1]	[226..1]
gi\|74267886, gi\|... - gi\|77736309\|ref\|NP_001029854.1\| chromatin modifying protein 5 [Bos taurus], gi\|74267886\|gb\|AAI03183....	166.0	[0..1]	[222..1]
gi\|94469372, gi\|... - gi\|94469372\|gb\|ABF18535.1\| vacuolar sorting protein [Aedes aegypti], gi\|157132031\|ref\|XP_001662415.1...	166.0	[0..1]	[226..1]

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Predicted Domain #1

Region A:
Residues: [1-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRLFGRGKP KEPGPSLNDC IAGVDARATN IEEKISNLEA ELRKYREQMS KMREGPAKNS  60
   61 VKQKALRVLK QKKAYEQQAE SLRNQSFNME QANYAAQSLK DTQATVAAMK DGVKQMKTEY 120
  121 KKINIDQIED IQDDMADMFE QADEVQEALG RTYGMPEVDD DDLQAELDAL GDEIALDDDT 180
  181 SYLDDVVKAP EAPSREPGAD SIVPGKSTIE TDEFGLPKIP TSLKTT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.0
Match:	2gd5A
Description:	No description for 2gd5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits