YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220949332
Organism:	synthetic construct
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220949332.

Description	E-value	Query Range	Subject Range
gi\|84938, gi\|157302 - pir\|\|A31101 drosulfakinin precursor - fruit fly (Drosophila melanogaster), gi\|157302\|gb\|AAB03703.1\|...	234.0	[0..14]	[141..1]
gi\|54639384, gi\|... - gi\|54639384\|gb\|EAL28786.1\| GA14787-PA [Drosophila pseudoobscura], gi\|125777524\|ref\|XP_001359636.1\| G... DSK_DROPS - Drosulfakinins OS=Drosophila pseudoobscura pseudoobscura GN=Dsk PE=3 SV=1	217.0	[0..14]	[141..1]
gi\|91083939 - gi\|91083939\|ref\|XP_974906.1\| PREDICTED: similar to CG18090-PA [Tribolium castaneum]	99.0	[0..73]	[141..8]
CSK_CALVO - Callisulfakinin OS=Calliphora vomitoria PE=1 SV=1	96.0	[0..22]	[141..15]
gi\|58803215 - gi\|58803215\|gb\|AAW82713.1\| sulfakinin [Anopheles maculatus]	69.0	[0..112]	[141..155]
AGAP009275-PA - Sk: sulfakinin neuropeptide\|protein_coding\|3R:30524512:30525096:1\|gene:AGAP009275 gi\|118791987, gi... - gi\|118791987\|ref\|XP_001238248.1\| sulfakinin (AGAP009275-PA) [Anopheles gambiae str. PEST], gi\|116117...	65.0	[0..112]	[141..164]
gi\|37790786 - gi\|37790786\|gb\|AAR03495.1\| sulfakinin preproprotein [Anopheles gambiae]	65.0	[0..112]	[141..163]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPRSCTHFA TLFMPLWALA FCFLVVLPIP AQTTSLQNAK DDRRLQELES KIGGEIDQPI  60
   61 ANLVGPSFSL FGDRRNQKTM SFGRRVPLIS RPIIPIELDL LMDNDDERTK AKRFDDYGHM 120
  121 RFGKRGGDDQ FDDYGHMRFG R

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits