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View Structure Prediction Details

Protein: gi|218191125
Organism: Oryza sativa Indica Group
Length: 744 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218191125.

Description E-value Query
Range
Subject
Range
gi|50082773, gi|... - gi|50082773|gb|AAT70082.1| hydroxymethylbutenyl 4-diphosphate synthase [Zea mays], gi|50082771|gb|AA...
822.0 [0..1] [744..1]

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Predicted Domain #1
Region A:
Residues: [1-151]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATGVAPAPL PHVRVRDGGI GFTRSVDFAK ILSVPATLRV GSSRGRVLVA KSSSTGSDTM  60
   61 ELEPSSEGSP LLVPRQKYCE SIYETRRRKT RTVMVGNVPL GSDHPIRIQT MTTSDTKDVA 120
  121 KTVEEVMRIA DKGADFVRIT VQGRKEADAC F

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [152-350]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EIKNTLVQKN YNIPLVADIH FAPTVALRVA ECFDKIRVNP GNFADRRAQF EQLEYTEDDY  60
   61 QKELEHIEKV FSPLVEKCKQ YGRAMRIGTN HGSLSDRIMS YYGDSPRGMV ESALEFARIC 120
  121 RKLDFHNFVF SMKASNPVIM VQAYRLLVAE MYNLGWDYPL HLGVTEAGEG EDGRMKSAIG 180
  181 IGTLLMDGLG DTIRVSLTE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [351-744]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPEEEIDPCR RLANLGTHAA DLQIGVAPFE EKHRRYFDFQ RRSGQLPLQK EGEEVDYRGV  60
   61 LHRDGSVLMS VSLDQLKAPE LLYRSLAAKL VVGMPFKDLA TVDSILLREL PPVEDAQARL 120
  121 ALKRLVDISM GVLTPLSEQL TKPLPHAIAL VNVDELSSGA HKLLPEGTRL AVTLRGDESY 180
  181 EQLDLLKGVD DITMLLHSVP YGEEKTGRVH AARRLFEYLE TNGLNFPVIH HIEFPKSVNR 240
  241 DDLVIGAGAN VGALLVDGLG DGVLLEAADQ EFEFLRDTSF NLLQGCRMRN TKTEYVSCPS 300
  301 CGRTLFDLQE VSAQIREKTS HLPGVSIAIM GCIVNGPGEM ADADFGYVGG APGKIDLYVG 360
  361 KTVVQRGIAM EGATDALIQL IKDHGRWVDP PVEE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.522879
Match: 1aopA
Description: SULFITE REDUCTASE STRUCTURE AT 1.6 ANGSTROM RESOLUTION
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.869619296732501 bayes_pls_golite062009
oxidoreductase activity 0.0799712629603699 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle