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View Structure Prediction Details

Protein: gi|218198975
Organism: Oryza sativa Indica Group
Length: 181 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218198975.

Description E-value Query
Range
Subject
Range
gi|37653251 - gi|37653251|emb|CAD79348.1| ferredoxin precursor [Digitalis lanata]
144.0 [0..23] [181..23]

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Predicted Domain #1
Region A:
Residues: [1-181]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRISQLGA RLLRENRAVG NLASSTTSYY RGQLSRRFVP TKNILFSTAT TSSDRDDGSQ  60
   61 SKEKISVTFV NKDGTEQTIS VPVGMSILEA AHENDIELEG ACEGSLACST CHVIVMDVNY 120
  121 YNKLEDPTDE ENDMLDLAFG LTETSRLGCQ VIAKPELDGM RLALPAATRN FAVDGFVPKP 180
  181 H

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.69897
Match: 1i7hA
Description: Adrenodoxin-like ferredoxin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ferrous iron binding 1.85747866468448 bayes_pls_golite062009
binding 1.43854872579441 bayes_pls_golite062009
2 iron, 2 sulfur cluster binding 0.64064605761447 bayes_pls_golite062009
iron ion binding 0.573352512627799 bayes_pls_golite062009
electron carrier activity 0.304665256428442 bayes_pls_golite062009
protein binding 0.299955399062748 bayes_pls_golite062009
iron-sulfur cluster binding 0.19654473978775 bayes_pls_golite062009
metal cluster binding 0.19654473978775 bayes_pls_golite062009
catalytic activity 0.105119876745552 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle