YRC Public Data Repository - Protein Structure Prediction

Protein:	GLHA_MONDO
Organism:	Monodelphis domestica
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLHA_MONDO.

Description	E-value	Query Range	Subject Range
gi\|88595363 - gi\|88595363\|dbj\|BAE79777.1\| glycoprotein hormones, alpha subunit precursor protein [Phodopus sungoru...	223.0	[0..1]	[120..2]
GLHA_AILFU - Glycoprotein hormones alpha chain OS=Ailurus fulgens GN=CGA PE=2 SV=1	223.0	[0..1]	[120..1]
GLHA_PANTA - Glycoprotein hormones alpha chain OS=Panthera tigris altaica GN=CGA PE=2 SV=1	223.0	[0..1]	[120..1]
GLHA_PIG - Glycoprotein hormones alpha chain OS=Sus scrofa GN=CGA PE=1 SV=2 gi\|226399, gi\|10... - gi\|226399\|prf\|\|1510300A glycoprotein hormone alpha, pir\|\|UTPGA glycoprotein hormones alpha chain pre...	223.0	[0..1]	[120..1]
GLHA_CERNI - Glycoprotein hormones alpha chain OS=Cervus nippon GN=CGA PE=2 SV=1	223.0	[0..1]	[120..1]
GLHA_BOSMU - Glycoprotein hormones alpha chain OS=Bos mutus grunniens GN=CGA PE=3 SV=1 GLHA_BOVIN - Glycoprotein hormones alpha chain OS=Bos taurus GN=CGA PE=1 SV=1	222.0	[0..1]	[120..1]
gi\|3719213 - gi\|3719213\|gb\|AAC63900.1\| gonadotrophin alpha subunit [Trichosurus vulpecula]	222.0	[0..1]	[120..1]
gi\|11096285 - gi\|11096285\|gb\|AAG30279.1\|AF307151_1 glycoprotein hormone alpha-subunit [Mus musculus molossinus] GLHA_MOUSE - Glycoprotein hormones alpha chain OS=Mus musculus GN=Cga PE=2 SV=1	222.0	[0..1]	[120..1]
gi\|75992455 - gi\|75992455\|dbj\|BAE45119.1\| glycoprotein hormone alpha subunit precursor protein [Cricetulus migrato...	222.0	[0..1]	[120..1]
GLHA_SHEEP - Glycoprotein hormones alpha chain OS=Ovis aries GN=CGA PE=1 SV=2	222.0	[0..1]	[120..1]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYYRKYAAV ILATLSVFLH ILHSFPDGEF IMQGCPECKL KENKYFSKLG APIYQCMGCC  60
   61 FSRAYPTPAR SKKTMLVPKN ITSEATCCVA KAFTKATVMG NAKVENHTEC HCSTCYYHKS 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.522879
Match:	1dz7A
Description:	Glycoprotein hormones alpha chain (Gonadotropin A, Follitropin alpha)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits