YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|157831261
Organism:	Escherichia coli
Length:	87 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|157831261.

Description	E-value	Query Range	Subject Range
gi\|157829820, gi... - gi\|2554715\|pdb\|1AE2\| Chain , Mutant L32r Of Gene V Protein (Single-Stranded Dna Binding Protein), ...	131.0	[0..1]	[87..1]
gi\|576358, gi\|15... - gi\|576358\|pdb\|1YHB\| Chain , Gene V Protein Mutant With Tyr 41 Replaced By Phe (Y41f), gi\|157834310...	130.0	[0..1]	[87..1]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKVEIKPSQ AQFTTRSGVS RQGKPYSLNE QLCYVDLGNE YPVLVKITLD EGQPAYAPGL  60
   61 YTVHLSSFKV GQFGSLMIDR LRLVPAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.221849
Match:	1ae2A
Description:	MUTANT L32R OF GENE V PROTEIN (SINGLE-STRANDED DNA BINDING PROTEIN)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.141433535514844	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: