YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167467630
Organism:	Yersinia pestis FV-1
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167467630.

Description	E-value	Query Range	Subject Range
gi\|186894174, gi... - gi\|186894174\|ref\|YP_001871286.1\| cytochrome b562 [Yersinia pseudotuberculosis PB1/+], gi\|186697200\|g... gi\|152959803, gi... - gi\|153948308\|ref\|YP_001402212.1\| cytochrome b562 [Yersinia pseudotuberculosis IP 31758], gi\|15295980... gi\|170025604, gi... - gi\|170025604\|ref\|YP_001722109.1\| cytochrome b562 [Yersinia pseudotuberculosis YPIII], gi\|169752138\|g... gi\|51595160, gi\|... - gi\|51595160\|ref\|YP_069351.1\| putative cytochrome b(562) [Yersinia pseudotuberculosis IP 32953], gi\|5... Q66E83\|Q66E83_YERPS - Putative cytochrome b(562) precursor - Yersinia pseudotuberculosis	1.0E-38	[1..127]	[1..127]
gi\|83569391, gi\|... - gi\|83569391\|ref\|ZP_00920845.1\| COG3783: Soluble cytochrome b562 [Shigella dysenteriae 1012], gi\|1944...	2.0E-37	[1..127]	[1..128]
gi\|227836284, gi... - gi\|227886711\|ref\|ZP_04004516.1\| soluble cytochrome b562 precursor [Escherichia coli 83972], gi\|22783... C562_ECOL6 - Soluble cytochrome b562 OS=Escherichia coli O6 GN=cybC PE=3 SV=1 gi\|215489581, gi... - gi\|215489581\|ref\|YP_002332012.1\| cytochrome b562 [Escherichia coli O127:H6 str. E2348/69], gi\|215267... gi\|170520855, gi... - gi\|170683137\|ref\|YP_001746638.1\| soluble cytochrome b562 [Escherichia coli SMS-3-5], gi\|170520855\|gb... C562_ECOL6 - Soluble cytochrome b562 OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=cybC PE=3 ...	3.0E-37	[1..127]	[1..128]
gi\|110644597, gi... - gi\|110644597\|ref\|YP_672327.1\| soluble cytochrome precursor [Escherichia coli 536], gi\|110346189\|gb\|A... gi\|218430188, gi... - gi\|218692624\|ref\|YP_002400836.1\| soluble cytochrome b562 [Escherichia coli ED1a], gi\|218430188\|emb\|C... gi\|117626582, gi... - gi\|117626582\|ref\|YP_859905.1\| soluble cytochrome b562 precursor [Escherichia coli APEC O1], gi\|11551... gi\|91075363, gi\|... - gi\|91213789\|ref\|YP_543775.1\| soluble cytochrome b562 precursor [Escherichia coli UTI89], gi\|91075363... gi\|188495739, gi... - gi\|75515473\|ref\|ZP_00737630.1\| COG3783: Soluble cytochrome b562 [Escherichia coli 53638], gi\|1884957... gi\|75242376, gi\|... - gi\|75242376\|ref\|ZP_00726138.1\| COG3783: Soluble cytochrome b562 [Escherichia coli F11], gi\|191170768... gi\|187730191, gi... - gi\|75179337\|ref\|ZP_00699341.1\| COG3783: Soluble cytochrome b562 [Shigella boydii BS512], gi\|18773019... gi\|218551530, gi... - gi\|218551530\|ref\|YP_002385322.1\| soluble cytochrome b562 [Escherichia fergusonii ATCC 35469], gi\|218... gi\|226901823, gi... - gi\|237703911\|ref\|ZP_04534392.1\| soluble cytochrome b562 [Escherichia sp. 3_2_53FAA], gi\|226901823\|gb...	4.0E-37	[1..127]	[1..128]
gi\|254796255, gi... - gi\|254796255\|ref\|YP_003081092.1\| soluble cytochrome b562 [Escherichia coli O157:H7 str. TW14359], gi... C562_ECO57 - Soluble cytochrome b562 OS=Escherichia coli O157:H7 GN=cybC PE=3 SV=1 gi\|38704247 - gi\|38704247\|ref\|NP_313240.2\| cytochrome b(562) [Escherichia coli O157:H7 str. Sakai] gi\|209396412, gi... - gi\|209396412\|ref\|YP_002273778.1\| soluble cytochrome b562 [Escherichia coli O157:H7 str. EC4115], gi\|... gi\|208821190, gi... - gi\|208821190\|ref\|ZP_03261510.1\| soluble cytochrome b562 [Escherichia coli O157:H7 str. EC4042], gi\|2... gi\|217322594, gi... - gi\|217326373\|ref\|ZP_03442457.1\| soluble cytochrome b562 [Escherichia coli O157:H7 str. TW14588], gi\|... gi\|195937261 - gi\|195937261\|ref\|ZP_03082643.1\| cytochrome b(562) [Escherichia coli O157:H7 str. EC4024] gi\|168797811, gi... - gi\|189379448\|gb\|EDU97864.1\| soluble cytochrome b562 [Escherichia coli O157:H7 str. EC508], gi\|168797... gi\|208813569, gi... - gi\|208813569\|ref\|ZP_03254898.1\| soluble cytochrome b562 [Escherichia coli O157:H7 str. EC4045], gi\|2... gi\|208727256, gi... - gi\|208807455\|ref\|ZP_03249792.1\| soluble cytochrome b562 [Escherichia coli O157:H7 str. EC4206], gi\|2... gi\|168774047, gi... - gi\|187770306\|gb\|EDU34150.1\| soluble cytochrome b562 [Escherichia coli O157:H7 str. EC4196], gi\|16877... gi\|189363902, gi... - gi\|189363902\|gb\|EDU82321.1\| soluble cytochrome b562 [Escherichia coli O157:H7 str. EC4486], gi\|16876... gi\|168784881, gi... - gi\|189375091\|gb\|EDU93507.1\| soluble cytochrome b562 [Escherichia coli O157:H7 str. EC869], gi\|168784... gi\|168782758, gi... - gi\|188999822\|gb\|EDU68808.1\| soluble cytochrome b562 [Escherichia coli O157:H7 str. EC4076], gi\|16878... gi\|188014801, gi... - gi\|188014801\|gb\|EDU52923.1\| soluble cytochrome b562 [Escherichia coli O157:H7 str. EC4113], gi\|16875... gi\|168760486, gi... - gi\|189368886\|gb\|EDU87302.1\| soluble cytochrome b562 [Escherichia coli O157:H7 str. EC4501], gi\|16876... gi\|168754813, gi... - gi\|189357869\|gb\|EDU76288.1\| soluble cytochrome b562 [Escherichia coli O157:H7 str. EC4401], gi\|16875...	4.0E-37	[1..127]	[1..128]
gi\|253775139, gi... - gi\|253775139\|ref\|YP_003037970.1\| cytochrome b562 [Escherichia coli BL21(DE3)], gi\|253326183\|gb\|ACT30... gi\|218363555, gi... - gi\|218556786\|ref\|YP_002389700.1\| soluble cytochrome b562 [Escherichia coli IAI1], gi\|218363555\|emb\|C... gi\|209921732, gi... - gi\|209921732\|ref\|YP_002295816.1\| cytochrome b562 [Escherichia coli SE11], gi\|209914991\|dbj\|BAG80065.... gi\|110617570, gi... - gi\|110808022\|ref\|YP_691542.1\| cytochrome b(562) [Shigella flexneri 5 str. 8401], gi\|110617570\|gb\|ABF... gi\|218434942, gi... - gi\|218707845\|ref\|YP_002415364.1\| soluble cytochrome b562 [Escherichia coli UMN026], gi\|218434942\|emb... C562_ECOLX - Soluble cytochrome b562 OS=Escherichia coli GN=cybC PE=1 SV=1 gi\|115260 - sp\|P00192\|C562_ECOLI Soluble cytochrome b562 precursor (Cytochrome b-562) gi\|75188949, gi\|... - gi\|75188949\|ref\|ZP_00702216.1\| COG3783: Soluble cytochrome b562 [Escherichia coli E24377A], gi\|15715... C562_ECOLI - Soluble cytochrome b562 precursor - Escherichia coli (strain K12)	1.0E-36	[1..127]	[1..128]
gi\|218697986, gi... - gi\|218697986\|ref\|YP_002405653.1\| soluble cytochrome b562 [Escherichia coli 55989], gi\|218354718\|emb\|... gi\|75258338, gi\|... - gi\|75258338\|ref\|ZP_00729769.1\| COG3783: Soluble cytochrome b562 [Escherichia coli E22], gi\|193063642... gi\|75212209, gi\|... - gi\|75212209\|ref\|ZP_00712249.1\| COG3783: Soluble cytochrome b562 [Escherichia coli B171], gi\|19442669... gi\|157069390, gi... - gi\|75198087\|ref\|ZP_00708157.1\| COG3783: Soluble cytochrome b562 [Escherichia coli HS], gi\|157163710\|...	2.0E-36	[1..127]	[1..128]
gi\|169756681, gi... - gi\|170021753\|ref\|YP_001726707.1\| cytochrome b562 [Escherichia coli ATCC 8739], gi\|169756681\|gb\|ACA79... gi\|193069841, gi... - gi\|75235455\|ref\|ZP_00719663.1\| COG3783: Soluble cytochrome b562 [Escherichia coli E110019], gi\|19306... gi\|190902717, gi... - gi\|75229607\|ref\|ZP_00716146.1\| COG3783: Soluble cytochrome b562 [Escherichia coli B7A], gi\|191167264... gi\|194423265, gi... - gi\|83586735\|ref\|ZP_00925367.1\| COG3783: Soluble cytochrome b562 [Escherichia coli 101-1], gi\|1944377... gi\|124528298, gi... - gi\|124528298\|ref\|ZP_01699622.1\| transcriptional regulator, Fis family [Escherichia coli B], gi\|12450... gi\|218561396, gi... - gi\|218561396\|ref\|YP_002394309.1\| soluble cytochrome b562 [Escherichia coli S88], gi\|218368165\|emb\|CA...	2.0E-36	[1..127]	[1..128]
gi\|62182863, gi\|... - gi\|62182863\|ref\|YP_219280.1\| cytochrome b(562) [Salmonella enterica subsp. enterica serovar Cholerae... gi\|56130468, gi\|... - gi\|56416211\|ref\|YP_153286.1\| soluble cytochrome b562 [Salmonella enterica subsp. enterica serovar Pa... lcl\|NC_016856.1_... - [gene=cybC] [protein=cytochrome b562] [protein_id=YP_005240760.1] [location=4696110..4696496] C562_SALTI - Soluble cytochrome b562 OS=Salmonella typhi GN=cybC PE=3 SV=1 C562_SALTY - Soluble cytochrome b562 OS=Salmonella typhimurium GN=cybC PE=3 SV=1 gi\|194445837, gi... - gi\|194445837\|ref\|YP_002043676.1\| soluBle cytochrome b562 [Salmonella enterica subsp. enterica serova... gi\|194469963, gi... - gi\|194469963\|ref\|ZP_03075947.1\| soluBle cytochrome b562 [Salmonella enterica subsp. enterica serovar... gi\|194710929, gi... - gi\|194735427\|ref\|YP_002117359.1\| soluBle cytochrome b562 [Salmonella enterica subsp. enterica serova... gi\|197213820, gi... - gi\|197250117\|ref\|YP_002149356.1\| soluBle cytochrome b562 [Salmonella enterica subsp. enterica serova... gi\|205333000, gi... - gi\|205333000\|gb\|EDZ19764.1\| soluble cytochrome b562 [Salmonella enterica subsp. enterica serovar Ken... gi\|197291663, gi... - gi\|197291663\|gb\|EDY31013.1\| soluBle cytochrome b562 (cytochrome b-562) [Salmonella enterica subsp. e... gi\|168262523, gi... - gi\|205348802\|gb\|EDZ35433.1\| soluble cytochrome b562 [Salmonella enterica subsp. enterica serovar Had... gi\|168464689, gi... - gi\|195633013\|gb\|EDX51467.1\| soluBle cytochrome b562 [Salmonella enterica subsp. enterica serovar New... gi\|238910595 - gi\|238910595\|ref\|ZP_04654432.1\| soluble cytochrome b562 [Salmonella enterica subsp. enterica serovar... gi\|161367089, gi... - gi\|161617725\|ref\|YP_001591690.1\| hypothetical protein SPAB_05588 [Salmonella enterica subsp. enteric... gi\|167551312, gi... - gi\|205323919\|gb\|EDZ11758.1\| soluble cytochrome b562 [Salmonella enterica subsp. enterica serovar Sai... gi\|205330383, gi... - gi\|205330383\|gb\|EDZ17147.1\| soluble cytochrome b562 [Salmonella enterica subsp. enterica serovar 4,[... gi\|213649725 - gi\|213649725\|ref\|ZP_03379778.1\| soluble cytochrome b562 [Salmonella enterica subsp. enterica serovar... gi\|213865363 - gi\|213865363\|ref\|ZP_03387482.1\| soluble cytochrome b562 [Salmonella enterica subsp. enterica serovar... gi\|213979669 - gi\|213979669\|ref\|ZP_03406928.1\| soluble cytochrome b562 [Salmonella enterica subsp. enterica serovar... gi\|214002799 - gi\|214002799\|ref\|ZP_03413534.1\| soluble cytochrome b562 [Salmonella enterica subsp. enterica serovar... gi\|213053342 - gi\|213053342\|ref\|ZP_03346220.1\| soluble cytochrome b562 [Salmonella enterica subsp. enterica serovar... gi\|213421273 - gi\|213421273\|ref\|ZP_03354339.1\| soluble cytochrome b562 [Salmonella enterica subsp. enterica serovar... gi\|213427675 - gi\|213427675\|ref\|ZP_03360425.1\| soluble cytochrome b562 [Salmonella enterica subsp. enterica serovar... gi\|213581163 - gi\|213581163\|ref\|ZP_03362989.1\| soluble cytochrome b562 [Salmonella enterica subsp. enterica serovar... gi\|204927211, gi... - gi\|204927211\|ref\|ZP_03218413.1\| soluble cytochrome b562 [Salmonella enterica subsp. enterica serovar... gi\|205274956, gi... - gi\|205355175\|ref\|YP_002228976.1\| soluble cytochrome b562 [Salmonella enterica subsp. enterica serova... C562_SALTY - Soluble cytochrome b562 OS=Salmonella typhimurium GN=cybC PE=3 SV=1 gi\|207859566, gi... - gi\|207859566\|ref\|YP_002246217.1\| soluble cytochrome b562 [Salmonella enterica subsp. enterica serova... gi\|213027352 - gi\|213027352\|ref\|ZP_03341799.1\| soluble cytochrome b562 [Salmonella enterica subsp. enterica serovar... gi\|197263801, gi... - gi\|197263801\|ref\|ZP_03163875.1\| solublecytochrome b562 [Salmonella enterica subsp. enterica serovar ... gi\|197365134, gi... - gi\|197365134\|ref\|YP_002144771.1\| soluble cytochrome b562 [Salmonella enterica subsp. enterica serova... gi\|198244303, gi... - gi\|198244303\|ref\|YP_002218302.1\| soluBle cytochrome b562 [Salmonella enterica subsp. enterica serova... gi\|200387899, gi... - gi\|200387899\|ref\|ZP_03214511.1\| soluBle cytochrome b562 [Salmonella enterica subsp. enterica serovar... C562_SALTY - Soluble cytochrome b562 OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=cybC PE=1... C562_SALTI - Soluble cytochrome b562 OS=Salmonella typhi GN=cybC PE=3 SV=1 gi\|16763239 - gi\|16763239\|ref\|NP_458856.1\| soluble cytochrome b562 [Salmonella enterica subsp. enterica serovar Ty... gi\|29144718, gi\|... - gi\|29144718\|ref\|NP_808060.1\| soluble cytochrome b562 [Salmonella enterica subsp. enterica serovar Ty...	9.0E-36	[1..127]	[1..128]
gi\|149289008, gi... - gi\|153997371\|ref\|ZP_02022471.1\| putative cytochrome [Yersinia pestis CA88-4125], gi\|149289008\|gb\|EDM... gi\|165928303, gi... - gi\|165928303\|ref\|ZP_02224135.1\| cytochrome b562 [Yersinia pestis biovar Orientalis str. F1991016], g... gi\|165989806, gi... - gi\|166011422\|ref\|ZP_02232320.1\| cytochrome b562 [Yersinia pestis biovar Antiqua str. E1979001], gi\|1... gi\|145597617, gi... - gi\|145597617\|ref\|YP_001161693.1\| cytochrome [Yersinia pestis Pestoides F], gi\|145209313\|gb\|ABP38720.... gi\|166211982, gi... - gi\|166211982\|ref\|ZP_02238017.1\| cytochrome b562 [Yersinia pestis biovar Antiqua str. B42003004], gi\|... gi\|167400717, gi... - gi\|167400717\|ref\|ZP_02306226.1\| cytochrome b562 [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|... gi\|115349312, gi... - gi\|218930701\|ref\|YP_002348576.1\| putative cytochrome [Yersinia pestis CO92], gi\|16123833\|ref\|NP_4071... gi\|51597831, gi\|... - gi\|51597831\|ref\|YP_072022.1\| putative cytochrome [Yersinia pseudotuberculosis IP 32953], gi\|51591113... gi\|162420813, gi... - gi\|77633540\|ref\|ZP_00795666.1\| COG3783: Soluble cytochrome b562 [Yersinia pestis Angola], gi\|1624208... gi\|153948322, gi... - gi\|77630539\|ref\|ZP_00793125.1\| COG3783: Soluble cytochrome b562 [Yersinia pseudotuberculosis IP 3175... C5622_YERPE - Probable soluble cytochrome b562 2 OS=Yersinia pestis GN=cybC2 PE=3 SV=1 gi\|229687312, gi... - gi\|229899820\|ref\|ZP_04514961.1\| putative cytochrome [Yersinia pestis biovar Orientalis str. India 19... gi\|229695622, gi... - gi\|229839256\|ref\|ZP_04459415.1\| putative cytochrome [Yersinia pestis biovar Orientalis str. PEXU2], ... gi\|229836846, gi... - gi\|229836846\|ref\|ZP_04457011.1\| putative cytochrome [Yersinia pestis Pestoides A], gi\|229705789\|gb\|E... gi\|89105412, gi\|... - gi\|89105412\|ref\|ZP_01177932.1\| COG3783: Soluble cytochrome b562 [Yersinia pestis biovar Orientalis s... gi\|108809698, gi... - gi\|108809698\|ref\|YP_653614.1\| putative cytochrome [Yersinia pestis Antiqua], gi\|108781611\|gb\|ABG1566... gi\|108813638, gi... - gi\|229904132\|ref\|ZP_04519243.1\| putative cytochrome [Yersinia pestis Nepal516], gi\|229678250\|gb\|EEO7... gi\|166961497, gi... - gi\|167420691\|ref\|ZP_02312444.1\| cytochrome b562 [Yersinia pestis biovar Orientalis str. MG05-1020], ... gi\|167426742, gi... - gi\|167426742\|ref\|ZP_02318495.1\| cytochrome b562 [Yersinia pestis biovar Mediaevalis str. K1973002], ... Q665H8\|Q665H8_YERPS - Putative cytochrome precursor - Yersinia pseudotuberculosis gi\|167468356 - gi\|167468356\|ref\|ZP_02333060.1\| putative cytochrome [Yersinia pestis FV-1] gi\|169749277, gi... - gi\|170022743\|ref\|YP_001719248.1\| cytochrome b562 [Yersinia pseudotuberculosis YPIII], gi\|169749277\|g... gi\|186897023, gi... - gi\|186897023\|ref\|YP_001874135.1\| cytochrome b562 [Yersinia pseudotuberculosis PB1/+], gi\|186700049\|g...	6.0E-32	[2..127]	[3..128]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKIPIIAGV FSLLITSCTF AASLQDDMNI LIANLGIVSS STDTKVITSS LEKMRNAALD  60
   61 AQKAIPPKLE GKAEDSPEIK DYRHGFDLLI EQIDKTKQWA EEGNIQEVKK SVGEVINIRN 120
  121 TYHSRYR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.69897
Match:	1apcA
Description:	SOLUTION STRUCTURE OF APOCYTOCHROME B562
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits