YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|221320365
Organism:	Bacillus subtilis subsp. subtilis str. JH642
Length:	73 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|221320365.

Description	E-value	Query Range	Subject Range
gi\|75760168, gi\|... - gi\|75760168\|ref\|ZP_00740226.1\| Spore germination protein PA [Bacillus thuringiensis serovar israelen... gi\|118415957, gi... - gi\|118476732\|ref\|YP_893883.1\| spore germination protein PA [Bacillus thuringiensis str. Al Hakam], g...	90.0	[0..1]	[72..4]
gi\|221313234 - gi\|221313234\|ref\|ZP_03595039.1\| spore germination protein [Bacillus subtilis subsp. subtilis str. NC... GERPA_BACSU - Probable spore germination protein GerPA OS=Bacillus subtilis (strain 168) GN=gerPA PE=1 SV=1 gi\|221322432 - gi\|221322432\|ref\|ZP_03603726.1\| spore germination protein [Bacillus subtilis subsp. subtilis str. SM... gi\|221318157 - gi\|221318157\|ref\|ZP_03599451.1\| spore germination protein [Bacillus subtilis subsp. subtilis str. JH... GEPA_BACSU, GERP... - Probable spore germination protein gerPA OS=Bacillus subtilis GN=gerPA PE=1 SV=1, (O06721) Probable ...	89.0	[0..1]	[73..1]
gi\|228788480, gi... - gi\|228971245\|ref\|ZP_04131874.1\| spore germination protein gerPA [Bacillus thuringiensis serovar thur... gi\|228957518, gi... - gi\|228957518\|ref\|ZP_04119270.1\| spore germination protein gerPA [Bacillus thuringiensis serovar paki... gi\|228984318, gi... - gi\|228984318\|ref\|ZP_04144499.1\| spore germination protein gerPA [Bacillus thuringiensis serovar toch... gi\|47555803, gi\|... - gi\|47567608\|ref\|ZP_00238319.1\| spore germination protein PA-related protein [Bacillus cereus G9241],... gi\|228781872, gi... - gi\|228977854\|ref\|ZP_04138236.1\| spore germination protein gerPA [Bacillus thuringiensis Bt407], gi\|2... gi\|228714311, gi... - gi\|229068803\|ref\|ZP_04202099.1\| spore germination protein gerPA [Bacillus cereus F65185], gi\|2287143... gi\|228726330, gi... - gi\|229042990\|ref\|ZP_04190721.1\| spore germination protein gerPA [Bacillus cereus AH676], gi\|22872633... gi\|229095732, gi... - gi\|229095732\|ref\|ZP_04226711.1\| spore germination protein gerPA [Bacillus cereus Rock3-29], gi\|22868... gi\|228704858, gi... - gi\|229078436\|ref\|ZP_04210997.1\| spore germination protein gerPA [Bacillus cereus Rock4-2], gi\|228704... gi\|228674736, gi... - gi\|229108706\|ref\|ZP_04238316.1\| spore germination protein gerPA [Bacillus cereus Rock1-15], gi\|22867... gi\|228681624, gi... - gi\|229101831\|ref\|ZP_04232546.1\| spore germination protein gerPA [Bacillus cereus Rock3-28], gi\|22868... gi\|228656946, gi... - gi\|229126557\|ref\|ZP_04255571.1\| spore germination protein gerPA [Bacillus cereus BDRD-Cer4], gi\|2286... gi\|229114682, gi... - gi\|229114682\|ref\|ZP_04244096.1\| spore germination protein gerPA [Bacillus cereus Rock1-3], gi\|228668... gi\|229149451, gi... - gi\|229149451\|ref\|ZP_04277687.1\| spore germination protein gerPA [Bacillus cereus m1550], gi\|22863409... gi\|229143854, gi... - gi\|229143854\|ref\|ZP_04272273.1\| spore germination protein gerPA [Bacillus cereus BDRD-ST24], gi\|2286... gi\|228628764, gi... - gi\|229154816\|ref\|ZP_04282931.1\| spore germination protein gerPA [Bacillus cereus ATCC 4342], gi\|2286... gi\|30019300, gi\|... - gi\|30019300\|ref\|NP_830931.1\| spore germination protein PA [Bacillus cereus ATCC 14579], gi\|29894843\|... gi\|42736245, gi\|... - gi\|42780326\|ref\|NP_977573.1\| spore germination protein GerPA [Bacillus cereus ATCC 10987], gi\|427362... gi\|228951613, gi... - gi\|228951613\|ref\|ZP_04113717.1\| spore germination protein gerPA [Bacillus thuringiensis serovar kurs... gi\|228821312, gi... - gi\|228938366\|ref\|ZP_04100977.1\| spore germination protein gerPA [Bacillus thuringiensis serovar berl...	88.0	[0..1]	[72..1]
gi\|52784937, gi\|... - gi\|52784937\|ref\|YP_090766.1\| GerPA [Bacillus licheniformis ATCC 14580], gi\|52347439\|gb\|AAU40073.1\| G...	88.0	[0..1]	[72..1]
gi\|164711156, gi... - gi\|165873102\|ref\|ZP_02217720.1\| spore germination protein GerPA [Bacillus anthracis str. A0488], gi\|... gi\|225789277, gi... - gi\|225863100\|ref\|YP_002748478.1\| spore germination protein GerPA [Bacillus cereus 03BB102], gi\|22578... gi\|227002650, gi... - gi\|227816006\|ref\|YP_002816015.1\| spore germination protein GerPA [Bacillus anthracis str. CDC 684], ... gi\|228899826, gi... - gi\|228899826\|ref\|ZP_04064072.1\| spore germination protein gerPA [Bacillus thuringiensis IBL 4222], g... gi\|228906874, gi... - gi\|228906874\|ref\|ZP_04070742.1\| spore germination protein gerPA [Bacillus thuringiensis IBL 200], gi... GERPA_BACAN - Probable spore germination protein GerPA OS=Bacillus anthracis GN=gerPA PE=3 SV=1 gi\|206736790, gi... - gi\|206967870\|ref\|ZP_03228826.1\| spore germination protein GerPA [Bacillus cereus AH1134], gi\|2067367... gi\|228913824, gi... - gi\|228913824\|ref\|ZP_04077449.1\| spore germination protein gerPA [Bacillus thuringiensis serovar puls... gi\|196024823, gi... - gi\|196044184\|ref\|ZP_03111420.1\| spore germination protein GerPA [Bacillus cereus 03BB108], gi\|196024... gi\|228839682, gi... - gi\|228919969\|ref\|ZP_04083323.1\| spore germination protein gerPA [Bacillus thuringiensis serovar huaz... gi\|217068032, gi... - gi\|217958726\|ref\|YP_002337274.1\| spore germination protein GerPA [Bacillus cereus AH187], gi\|2170680... gi\|228833384, gi... - gi\|228926287\|ref\|ZP_04089361.1\| spore germination protein gerPA [Bacillus thuringiensis serovar pond... gi\|206976519, gi... - gi\|206976519\|ref\|ZP_03237425.1\| spore germination protein GerPA [Bacillus cereus H3081.97], gi\|20674... gi\|228932524, gi... - gi\|228932524\|ref\|ZP_04095405.1\| spore germination protein gerPA [Bacillus thuringiensis serovar anda... gi\|218543309, gi... - gi\|218896184\|ref\|YP_002444595.1\| spore germination protein GerPA [Bacillus cereus G9842], gi\|2185433... gi\|228814885, gi... - gi\|228944857\|ref\|ZP_04107220.1\| spore germination protein gerPA [Bacillus thuringiensis serovar mont... gi\|218235083, gi... - gi\|218235083\|ref\|YP_002365933.1\| spore germination protein GerPA [Bacillus cereus B4264], gi\|2181630... gi\|228964193, gi... - gi\|228964193\|ref\|ZP_04125316.1\| spore germination protein gerPA [Bacillus thuringiensis serovar sott... gi\|229028918, gi... - gi\|229028918\|ref\|ZP_04185019.1\| spore germination protein gerPA [Bacillus cereus AH1271], gi\|2287324... GERPA_BACCE - Probable spore germination protein GerPA OS=Bacillus cereus GN=gerPA PE=1 SV=1 gi\|218902345, gi... - gi\|218902345\|ref\|YP_002450179.1\| spore germination protein GerPA [Bacillus cereus AH820], gi\|2185394... gi\|229090191, gi... - gi\|229090191\|ref\|ZP_04221439.1\| spore germination protein gerPA [Bacillus cereus Rock3-42], gi\|22869... gi\|167640236, gi... - gi\|167640236\|ref\|ZP_02398502.1\| spore germination protein GerPA [Bacillus anthracis str. A0193], gi\|... gi\|228662777, gi... - gi\|229120772\|ref\|ZP_04250015.1\| spore germination protein gerPA [Bacillus cereus 95/8201], gi\|228662... gi\|167529203, gi... - gi\|167635375\|ref\|ZP_02393689.1\| spore germination protein GerPA [Bacillus anthracis str. A0442], gi\|... gi\|228645593, gi... - gi\|229137936\|ref\|ZP_04266535.1\| spore germination protein gerPA [Bacillus cereus BDRD-ST26], gi\|2286... gi\|170127398, gi... - gi\|170707623\|ref\|ZP_02898075.1\| spore germination protein GerPA [Bacillus anthracis str. A0389], gi\|... gi\|229177663, gi... - gi\|229177663\|ref\|ZP_04305040.1\| spore germination protein gerPA [Bacillus cereus 172560W], gi\|228605... gi\|170688066, gi... - gi\|170688066\|ref\|ZP_02879278.1\| spore germination protein GerPA [Bacillus anthracis str. A0465], gi\|... gi\|228600035, gi... - gi\|229183451\|ref\|ZP_04310676.1\| spore germination protein gerPA [Bacillus cereus BGSC 6E1], gi\|22860... gi\|190566739, gi... - gi\|190566739\|ref\|ZP_03019656.1\| spore germination protein GerPA [Bacillus anthracis Tsiankovskii-I],... gi\|228594132, gi... - gi\|229189338\|ref\|ZP_04316358.1\| spore germination protein gerPA [Bacillus cereus ATCC 10876], gi\|228... gi\|172080104, gi... - gi\|177655505\|ref\|ZP_02936948.1\| spore germination protein GerPA [Bacillus anthracis str. A0174], gi\|... gi\|229195448, gi... - gi\|229195448\|ref\|ZP_04322216.1\| spore germination protein gerPA [Bacillus cereus m1293], gi\|22858798... gi\|196037592, gi... - gi\|196037592\|ref\|ZP_03104903.1\| spore germination protein GerPA [Bacillus cereus NVH0597-99], gi\|196... gi\|229600378, gi... - gi\|229600378\|ref\|YP_002865679.1\| spore germination protein GerPA [Bacillus anthracis str. A0248], gi... gi\|195991213, gi... - gi\|196036238\|ref\|ZP_03103637.1\| spore germination protein GerPA [Bacillus cereus W], gi\|195991213\|gb... gi\|254682683 - gi\|254682683\|ref\|ZP_05146544.1\| spore germination protein PA [Bacillus anthracis str. CNEVA-9066] gi\|30254870, gi\|... - gi\|30261256\|ref\|NP_843633.1\| spore germination protein GerPA [Bacillus anthracis str. Ames], gi\|3025... gi\|254725476 - gi\|254725476\|ref\|ZP_05187258.1\| spore germination protein PA [Bacillus anthracis str. A1055] gi\|21399071, gi\|... - gi\|65318527\|ref\|ZP_00391486.1\| hypothetical protein Bant_01001781 [Bacillus anthracis str. A2012], r... gi\|254734101 - gi\|254734101\|ref\|ZP_05191814.1\| spore germination protein PA [Bacillus anthracis str. Western North ... gi\|254740255 - gi\|254740255\|ref\|ZP_05197947.1\| spore germination protein PA [Bacillus anthracis str. Kruger B] gi\|254753595 - gi\|254753595\|ref\|ZP_05205631.1\| spore germination protein PA [Bacillus anthracis str. Vollum] gi\|254758692 - gi\|254758692\|ref\|ZP_05210719.1\| spore germination protein PA [Bacillus anthracis str. Australia 94] gi\|49480824, gi\|... - gi\|49480824\|ref\|YP_035385.1\| spore germination protein PA [Bacillus thuringiensis serovar konkukian ... gi\|49184088, gi\|... - gi\|49184088\|ref\|YP_027340.1\| spore germination protein GerPA [Bacillus anthracis str. Sterne], gi\|49... gi\|47501566, gi\|... - gi\|47526418\|ref\|YP_017767.1\| spore germination protein GerPA [Bacillus anthracis str. 'Ames Ancestor...	88.0	[0..1]	[72..1]
gi\|52144183, gi\|... - gi\|52144183\|ref\|YP_082647.1\| spore germination protein PA [Bacillus cereus E33L], gi\|51977652\|gb\|AAU...	87.0	[0..1]	[72..1]
gi\|229330035, gi... - gi\|229499068\|ref\|ZP_04392758.1\| spore germination protein [Geobacillus sp. Y412MC52], gi\|229330035\|g... gi\|221088464, gi... - gi\|221088464\|ref\|ZP_03557994.1\| spore germination protein [Geobacillus sp. Y412MC61], gi\|220707608\|g... gi\|56419225, gi\|... - gi\|56419225\|ref\|YP_146543.1\| spore germination protein [Geobacillus kaustophilus HTA426], gi\|5637906...	86.0	[0..1]	[72..1]
gi\|163861240, gi... - gi\|89205682\|ref\|ZP_01184250.1\| spore germination protein GerPA [Bacillus weihenstephanensis KBAB4], ... gi\|229010538, gi... - gi\|229010538\|ref\|ZP_04167740.1\| spore germination protein gerPA [Bacillus mycoides DSM 2048], gi\|228... gi\|229022707, gi... - gi\|229022707\|ref\|ZP_04179231.1\| spore germination protein gerPA [Bacillus cereus AH1272], gi\|2287385... gi\|228744765, gi... - gi\|229016498\|ref\|ZP_04173439.1\| spore germination protein gerPA [Bacillus cereus AH1273], gi\|2287447... gi\|229166083, gi... - gi\|229166083\|ref\|ZP_04293845.1\| spore germination protein gerPA [Bacillus cereus AH621], gi\|22861739... gi\|228651439, gi... - gi\|229132039\|ref\|ZP_04260902.1\| spore germination protein gerPA [Bacillus cereus BDRD-ST196], gi\|228...	85.0	[0..1]	[72..1]

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Predicted Domain #1

Region A:
Residues: [1-73]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAIVGPIYI MSVTDNAAAS FGDVFAISPK SVAHSGAGSG TFQLGDFVKI NNQTSKTLFK  60
   61 DADITDETVS FNG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits