YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213420364
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E01-6750
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213420364.

Description	E-value	Query Range	Subject Range
gi\|26106810, gi\|... - gi\|26246412\|ref\|NP_752451.1\| preprotein translocase subunit YajC [Escherichia coli CFT073], gi\|26106... gi\|237707599, gi... - gi\|237707599\|ref\|ZP_04538080.1\| preprotein translocase subunit YajC [Escherichia sp. 3_2_53FAA], gi\|... gi\|91209475, gi\|... - gi\|91209475\|ref\|YP_539461.1\| hypothetical protein YajC [Escherichia coli UTI89], gi\|91071049\|gb\|ABE0...	1.0E-36	[1..110]	[11..120]
gi\|168800284, gi... - gi\|189377408\|gb\|EDU95824.1\| preprotein translocase, YajC subunit [Escherichia coli O157:H7 str. EC50... YAJC_ECOLI - UPF0092 membrane protein yajC - Escherichia coli gi\|168786248, gi... - gi\|189373656\|gb\|EDU92072.1\| preprotein translocase, YajC subunit [Escherichia coli O157:H7 str. EC86... gi\|169887828, gi... - gi\|170079993\|ref\|YP_001729313.1\| SecYEG protein translocase auxillary subunit [Escherichia coli str.... gi\|170021221, gi... - gi\|170021221\|ref\|YP_001726175.1\| preprotein translocase subunit YajC [Escherichia coli ATCC 8739], g... gi\|170767764, gi... - gi\|170767764\|ref\|ZP_02902217.1\| preprotein translocase, YajC subunit [Escherichia albertii TW07627],... gi\|170683289, gi... - gi\|170683289\|ref\|YP_001742542.1\| preprotein translocase, YajC subunit [Escherichia coli SMS-3-5], gi... gi\|208808119, gi... - gi\|208808119\|ref\|ZP_03250456.1\| preprotein translocase, YajC subunit [Escherichia coli O157:H7 str. ... gi\|195938530 - gi\|195938530\|ref\|ZP_03083912.1\| preprotein translocase subunit YajC [Escherichia coli O157:H7 str. E... gi\|162138481 - gi\|162138481\|ref\|YP_539461.2\| preprotein translocase subunit YajC [Escherichia coli UTI89] YAJC_ECOL6 - UPF0092 membrane protein yajC OS=Escherichia coli O6 GN=yajC PE=3 SV=1 YAJC_ECOL6 - UPF0092 membrane protein YajC OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yajC... gi\|168756943, gi... - gi\|189356026\|gb\|EDU74445.1\| preprotein translocase, YajC subunit [Escherichia coli O157:H7 str. EC44... gi\|188015895, gi... - gi\|188015895\|gb\|EDU54017.1\| preprotein translocase, YajC subunit [Escherichia coli O157:H7 str. EC41... gi\|189362468, gi... - gi\|189362468\|gb\|EDU80887.1\| preprotein translocase, YajC subunit [Escherichia coli O157:H7 str. EC44... gi\|189367973, gi... - gi\|189367973\|gb\|EDU86389.1\| preprotein translocase, YajC subunit [Escherichia coli O157:H7 str. EC45... gi\|188999365, gi... - gi\|188999365\|gb\|EDU68351.1\| preprotein translocase, YajC subunit [Escherichia coli O157:H7 str. EC40... gi\|168776293, gi... - gi\|187768268\|gb\|EDU32112.1\| preprotein translocase, YajC subunit [Escherichia coli O157:H7 str. EC41... gi\|115511792, gi... - gi\|117622668\|ref\|YP_851581.1\| preprotein translocase subunit YajC [Escherichia coli APEC O1], gi\|115... gi\|124500219, gi... - gi\|124528882\|ref\|ZP_01700067.1\| preprotein translocase, YajC subunit [Escherichia coli B], gi\|124500... EG11096 - SecYEG protein translocase auxillary subunit / SecDFyajC membrane secretion complex subunit; assists... YAJC_SHIFL - UPF0092 membrane protein YajC OS=Shigella flexneri GN=yajC PE=3 SV=1 gi\|24050572, gi\|... - gi\|24111785\|ref\|NP_706295.1\| preprotein translocase subunit YajC [Shigella flexneri 2a str. 301], gi... gi\|30040146, gi\|... - gi\|30061902\|ref\|NP_836073.1\| preprotein translocase subunit YajC [Shigella flexneri 2a str. 2457T], ... YAJC_ECO57 - UPF0092 membrane protein YajC OS=Escherichia coli O157:H7 GN=yajC PE=3 SV=1 EG11096 - SecYEG protein translocase auxillary subunit / SecDFyajC membrane secretion complex subunit; assists... gi\|12513257, gi\|... - gi\|15800134\|ref\|NP_286146.1\| preprotein translocase subunit YajC [Escherichia coli O157:H7 EDL933], ... gi\|85674547, gi\|... - gi\|89107277\|ref\|AP_001057.1\| SecYEG protein translocase auxillary subunit [Escherichia coli str. K-1... gi\|82542895, gi\|... - gi\|82542895\|ref\|YP_406842.1\| preprotein translocase subunit YajC [Shigella boydii Sb227], gi\|8124430... gi\|81239836, gi\|... - gi\|82775688\|ref\|YP_402035.1\| preprotein translocase subunit YajC [Shigella dysenteriae Sd197], gi\|81... gi\|74310976, gi\|... - gi\|74310976\|ref\|YP_309395.1\| preprotein translocase subunit YajC [Shigella sonnei Ss046], gi\|7385445... gi\|75230132, gi\|... - gi\|75230132\|ref\|ZP_00716636.1\| COG1862: Preprotein translocase subunit YajC [Escherichia coli B7A], ... gi\|194428816, gi... - gi\|75209963\|ref\|ZP_00710152.1\| COG1862: Preprotein translocase subunit YajC [Escherichia coli B171],... gi\|157065607, gi... - gi\|75194626\|ref\|ZP_00704696.1\| COG1862: Preprotein translocase subunit YajC [Escherichia coli HS], g... gi\|75189474, gi\|... - gi\|75189474\|ref\|ZP_00702741.1\| COG1862: Preprotein translocase subunit YajC [Escherichia coli E24377... gi\|75512468, gi\|... - gi\|75512468\|ref\|ZP_00735007.1\| COG1862: Preprotein translocase subunit YajC [Escherichia coli 53638]... gi\|75256779, gi\|... - gi\|75256779\|ref\|ZP_00728384.1\| COG1862: Preprotein translocase subunit YajC [Escherichia coli E22], ... gi\|190906244, gi... - gi\|75238734\|ref\|ZP_00722722.1\| COG1862: Preprotein translocase subunit YajC [Escherichia coli F11], ... gi\|75237212, gi\|... - gi\|75237212\|ref\|ZP_00721259.1\| COG1862: Preprotein translocase subunit YajC [Escherichia coli E11001... gi\|15829712, gi\|... - gi\|15829712\|ref\|NP_308485.1\| preprotein translocase subunit YajC [Escherichia coli O157:H7 str. Saka... gi\|83585674, gi\|... - gi\|83585674\|ref\|ZP_00924316.1\| COG1862: Preprotein translocase subunit YajC [Escherichia coli 101-1]... gi\|194419193, gi... - gi\|83570325\|ref\|ZP_00921770.1\| COG1862: Preprotein translocase subunit YajC [Shigella dysenteriae 10... gi\|110342260, gi... - gi\|110640668\|ref\|YP_668396.1\| preprotein translocase subunit YajC [Escherichia coli 536], gi\|1103422... gi\|110613977, gi... - gi\|110804429\|ref\|YP_687949.1\| preprotein translocase subunit YajC [Shigella flexneri 5 str. 8401], g... gi\|227838671, gi... - gi\|227884585\|ref\|ZP_04002390.1\| preprotein translocase subunit YajC [Escherichia coli 83972], gi\|227... gi\|238899695, gi... - gi\|238899695\|ref\|YP_002925491.1\| SecYEG protein translocase auxillary subunit [Escherichia coli BW29... gi\|242376185, gi... - gi\|251783912\|ref\|YP_002998216.1\| hypothetical protein B21_00359 [Escherichia coli BL21], gi\|24237618... gi\|254287277, gi... - gi\|254287277\|ref\|YP_003053025.1\| preprotein translocase subunit YajC [Escherichia coli BL21(DE3)], g... gi\|253972374, gi... - gi\|254160473\|ref\|YP_003043581.1\| preprotein translocase subunit YajC [Escherichia coli B str. REL606... gi\|254590988, gi... - gi\|254791588\|ref\|YP_003076425.1\| SecYEG protein translocase auxillary subunit [Escherichia coli O157... gi\|218425834, gi... - gi\|218688270\|ref\|YP_002396482.1\| preprotein translocase subunit YajC [Escherichia coli ED1a], gi\|218... gi\|218557316, gi... - gi\|218557316\|ref\|YP_002390229.1\| preprotein translocase subunit YajC [Escherichia coli S88], gi\|2183... gi\|218698688, gi... - gi\|218698688\|ref\|YP_002406317.1\| preprotein translocase subunit YajC [Escherichia coli IAI39], gi\|21... gi\|218350600, gi... - gi\|218693868\|ref\|YP_002401535.1\| preprotein translocase subunit YajC [Escherichia coli 55989], gi\|21... gi\|218703689, gi... - gi\|218703689\|ref\|YP_002411208.1\| preprotein translocase subunit YajC [Escherichia coli UMN026], gi\|2... gi\|208737372, gi... - gi\|208823179\|ref\|ZP_03263497.1\| preprotein translocase, YajC subunit [Escherichia coli O157:H7 str. ... gi\|208816158, gi... - gi\|208816158\|ref\|ZP_03257337.1\| preprotein translocase, YajC subunit [Escherichia coli O157:H7 str. ... gi\|209910878, gi... - gi\|209917619\|ref\|YP_002291703.1\| preprotein translocase subunit YajC [Escherichia coli SE11], gi\|209... gi\|209157223, gi... - gi\|209395823\|ref\|YP_002269049.1\| preprotein translocase, YajC subunit [Escherichia coli O157:H7 str.... gi\|217320743, gi... - gi\|217324522\|ref\|ZP_03440606.1\| preprotein translocase, YajC subunit [Escherichia coli O157:H7 str. ... gi\|215263560, gi... - gi\|215485488\|ref\|YP_002327919.1\| preprotein translocase subunit YajC [Escherichia coli O127:H6 str. ... gi\|218552970, gi... - gi\|218552970\|ref\|YP_002385883.1\| preprotein translocase subunit YajC [Escherichia coli IAI1], gi\|218... gi\|218357474, gi... - gi\|218549933\|ref\|YP_002383724.1\| preprotein translocase subunit YajC [Escherichia fergusonii ATCC 35...	2.0E-36	[1..110]	[1..110]
gi\|42932 - gi\|42932\|emb\|CAA39633.1\| unnamed protein product [Escherichia coli]	2.0E-36	[1..110]	[1..110]
gi\|187733401, gi... - gi\|75176880\|ref\|ZP_00696996.1\| COG1862: Preprotein translocase subunit YajC [Shigella boydii BS512],...	8.0E-36	[1..110]	[1..110]
gi\|197363360, gi... - gi\|197363360\|ref\|YP_002142997.1\| preprotein translocase subunit YajC [Salmonella enterica subsp. ent... gi\|56414439, gi\|... - gi\|56414439\|ref\|YP_151514.1\| preprotein translocase subunit YajC [Salmonella enterica subsp. enteric...	8.0E-36	[1..110]	[1..110]
gi\|89072681, gi\|... - gi\|89072681\|ref\|ZP_01159246.1\| preprotein translocase subunit YajC [Photobacterium sp. SKA34], gi\|89...	9.0E-36	[1..110]	[1..111]
gi\|59480676, gi\|... - gi\|59712575\|ref\|YP_205351.1\| preprotein translocase subunit YajC [Vibrio fischeri ES114], gi\|5948067...	1.0E-35	[1..110]	[1..111]
gi\|90579385, gi\|... - gi\|90579385\|ref\|ZP_01235195.1\| preprotein translocase subunit YajC [Vibrio angustum S14], gi\|9044021...	1.0E-35	[1..110]	[1..111]
gi\|122090333, gi... - gi\|123443372\|ref\|YP_001007346.1\| preprotein translocase subunit YajC [Yersinia enterocolitica subsp.... gi\|77956916 - gi\|77956916\|ref\|ZP_00820989.1\| COG1862: Preprotein translocase subunit YajC [Yersinia bercovieri ATC... gi\|77962939 - gi\|77962939\|ref\|ZP_00826754.1\| COG1862: Preprotein translocase subunit YajC [Yersinia mollaretii ATC... gi\|77979418 - gi\|77979418\|ref\|ZP_00834837.1\| COG1862: Preprotein translocase subunit YajC [Yersinia intermedia ATC... gi\|77974335 - gi\|77974335\|ref\|ZP_00829876.1\| COG1862: Preprotein translocase subunit YajC [Yersinia frederiksenii ...	2.0E-35	[1..110]	[1..110]
gi\|90324329, gi\|... - gi\|90414613\|ref\|ZP_01222586.1\| preprotein translocase subunit YajC [Photobacterium profundum 3TCK], ...	8.0E-35	[1..110]	[1..111]

Back

Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFFISDAVA ATGAPAQGSP MSLILMLVVF GLIFYFMILR PQQKRTKEHK KLMDSIAKGD  60
   61 EVLTNGGLVG RVTKVAEAGY IAIALNDTTE VVIKRDFVAA VLPKGTMKAL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	46.30103
Match:	PF02699.6
Description:	No description for PF02699.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.652	N/A	N/A	b.38.1	Sm-like ribonucleoproteins
View	Download	0.637	N/A	N/A	b.38.1	Sm-like ribonucleoproteins
View	Download	0.636	N/A	N/A	b.38.1	Sm-like ribonucleoproteins
View	Download	0.603	N/A	N/A	b.38.2	YhbC-like, C-terminal domain
View	Download	0.585	N/A	N/A	b.38.1	Sm-like ribonucleoproteins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits