YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213053402
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E00-7866
Length:	280 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213053402.

Description	E-value	Query Range	Subject Range
gi\|68057240, gi\|... - gi\|68249041\|ref\|YP_248153.1\| hypothetical protein NTHI0568 [Haemophilus influenzae 86-028NP], gi\|680...	0.0	[1..280]	[1..281]
gi\|42629898 - gi\|42629898\|ref\|ZP_00155443.1\| COG2961: Protein involved in catabolism of external DNA [Haemophilus ... gi\|229810620, gi... - gi\|229846527\|ref\|ZP_04466635.1\| hypothetical protein CGSHi7P49H1_07640 [Haemophilus influenzae 7P49H...	0.0	[1..280]	[1..281]
RLMJ_HAEIN - Ribosomal RNA large subunit methyltransferase J OS=Haemophilus influenzae (strain ATCC 51907 / DSM 1... Y441_HAEIN, YHIR... - (P31777) Protein HI0441 (ORFJ), Uncharacterized protein HI_0441 OS=Haemophilus influenzae GN=HI_0441...	0.0	[1..280]	[1..281]
gi\|56415502, gi\|... - gi\|56415502\|ref\|YP_152577.1\| hypothetical protein SPA3454 [Salmonella enterica subsp. enterica serov... gi\|197364430, gi... - gi\|197364430\|ref\|YP_002144067.1\| hypothetical protein SSPA3226 [Salmonella enterica subsp. enterica ...	0.0	[1..280]	[1..280]
gi\|145638649, gi... - gi\|145638649\|ref\|ZP_01794258.1\| hypothetical protein CGSHiII_08041 [Haemophilus influenzae PittII], ... gi\|42630738 - gi\|42630738\|ref\|ZP_00156277.1\| COG2961: Protein involved in catabolism of external DNA [Haemophilus ...	0.0	[1..280]	[1..281]
gi\|27364529, gi\|... - gi\|27364529\|ref\|NP_760057.1\| external DNA catabolism protein [Vibrio vulnificus CMCP6], gi\|27360648\|... gi\|37678250, gi\|... - gi\|37678250\|ref\|NP_932859.1\| hypothetical protein VV0066 [Vibrio vulnificus YJ016], gi\|37196989\|dbj\|...	0.0	[1..280]	[1..279]
gi\|157080855, gi... - gi\|75188266\|ref\|ZP_00701533.1\| COG2961: Protein involved in catabolism of external DNA [Escherichia ...	0.0	[1..280]	[1..280]
gi\|91212992, gi\|... - gi\|91212992\|ref\|YP_542978.1\| hypothetical protein UTI89_C4018 [Escherichia coli UTI89], gi\|91074566\|... gi\|237703251, gi... - gi\|237703251\|ref\|ZP_04533732.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|26110549, gi\|... - gi\|26250120\|ref\|NP_756160.1\| hypothetical protein c4298 [Escherichia coli CFT073], gi\|26110549\|gb\|AA...	0.0	[1..280]	[18..297]
gi\|189364758, gi... - gi\|189364758\|gb\|EDU83177.1\| DNA utilization protein YhiR [Escherichia coli O157:H7 str. EC4486], gi\|... gi\|189369557, gi... - gi\|189369557\|gb\|EDU87973.1\| DNA utilization protein YhiR [Escherichia coli O157:H7 str. EC4501], gi\|... gi\|189358903, gi... - gi\|189358903\|gb\|EDU77322.1\| DNA utilization protein YhiR [Escherichia coli O157:H7 str. EC4401], gi\|... gi\|188018296, gi... - gi\|188018296\|gb\|EDU56418.1\| DNA utilization protein YhiR [Escherichia coli O157:H7 str. EC4113], gi\|... gi\|195935017 - gi\|195935017\|ref\|ZP_03080399.1\| hypothetical protein EscherichcoliO157_00935 [Escherichia coli O157:... gi\|168797314, gi... - gi\|189379912\|gb\|EDU98328.1\| DNA utilization protein YhiR [Escherichia coli O157:H7 str. EC508], gi\|1... gi\|254795442, gi... - gi\|254795442\|ref\|YP_003080279.1\| predicted DNA (exogenous) processing protein [Escherichia coli O157... gi\|168779627, gi... - gi\|189002643\|gb\|EDU71629.1\| DNA utilization protein YhiR [Escherichia coli O157:H7 str. EC4076], gi\|... gi\|168772564, gi... - gi\|187771674\|gb\|EDU35518.1\| DNA utilization protein YhiR [Escherichia coli O157:H7 str. EC4196], gi\|... gi\|15833625, gi\|... - gi\|15833625\|ref\|NP_312398.1\| hypothetical protein ECs4371 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|209755700, gi... - pir\|\|C86021 hypothetical protein yhiR [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|209157407, gi... - gi\|209396007\|ref\|YP_002272965.1\| DNA utilization protein YhiR [Escherichia coli O157:H7 str. EC4115]... gi\|208818608, gi... - gi\|208818608\|ref\|ZP_03258928.1\| DNA utilization protein YhiR [Escherichia coli O157:H7 str. EC4042],... gi\|15804034, gi\|... - gi\|15804034\|ref\|NP_290070.1\| hypothetical protein Z4899 [Escherichia coli O157:H7 EDL933], gi\|125181... gi\|208814596, gi... - gi\|208814596\|ref\|ZP_03255925.1\| DNA utilization protein YhiR [Escherichia coli O157:H7 str. EC4045],... gi\|15833625, gi\|... - gi\|15833625\|ref\|NP_312398.1\| hypothetical protein ECs4371 [Escherichia coli O157:H7], gi\|13363845\|db... gi\|208728286, gi... - gi\|208808485\|ref\|ZP_03250822.1\| DNA utilization protein YhiR [Escherichia coli O157:H7 str. EC4206],... gi\|217321405, gi... - gi\|217325184\|ref\|ZP_03441268.1\| DNA utilization protein YhiR [Escherichia coli O157:H7 str. TW14588]...	0.0	[1..280]	[1..280]
gi\|81242827, gi\|... - gi\|82778679\|ref\|YP_405028.1\| hypothetical protein SDY_3563 [Shigella dysenteriae Sd197], gi\|81242827...	0.0	[1..280]	[1..280]

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Predicted Domain #1

Region A:
Residues: [1-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSYRHSFHA GNHADVLKHT VQSLIIESLK EKEKPFLYLD THAGAGRYQL GSEHAERTGE  60
   61 YLEGIARIWQ QDDLPAELEP YISVVKHFNR SGQLRYYPGS PLIARQLLRE QDSLQLTELH 120
  121 PSDFPLLRAE FQKDNRARVE RADGYQQLKA KLPPVSRRGL ILIDPPYEMK TDYQAVVSGI 180
  181 SEGYKRFATG TYALWYPVVL RQQIKRMIHE LEATGIRKIL QIELAIRPDS DQRGMTASGM 240
  241 IVVNPPWKLE QQMNNVLPWL HSRLAPNGHG HTSVSWIVPE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	89.221849
Match:	2oo3A
Description:	No description for 2oo3A was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.25333584501255	bayes_pls_golite062009
transferase activity	0.999964866871553	bayes_pls_golite062009
methyltransferase activity	0.558878917426836	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.557560946446304	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.0605581837493382	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: