YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|205348229, gi...
Organism:	Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066
Length:	546 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|205348229, gi....

Description	E-value	Query Range	Subject Range
UBIB_ECOL5 - Probable protein kinase UbiB OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ubiB PE=3 SV=1 UBIB_ECOUT - Probable protein kinase UbiB OS=Escherichia coli (strain UTI89 / UPEC) GN=ubiB PE=3 SV=1 gi\|75237630, gi\|... - gi\|75237630\|ref\|ZP_00721650.1\| COG0661: Predicted unusual protein kinase [Escherichia coli F11], gi\|... UBIB_ECOK1 - Probable protein kinase UbiB OS=Escherichia coli O1:K1 / APEC GN=ubiB PE=3 SV=1 UBIB_ECO81 - Probable protein kinase UbiB OS=Escherichia coli O81 (strain ED1a) GN=ubiB PE=3 SV=1 UBIB_ECO45 - Probable protein kinase UbiB OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=ubiB PE=3 SV=1 gi\|227888551, gi... - gi\|227888551\|ref\|ZP_04006356.1\| ubiquinone biosynthesis protein UbiB [Escherichia coli 83972], gi\|22... gi\|237702870, gi... - gi\|237702870\|ref\|ZP_04533351.1\| 2-octaprenylphenol hydroxylase [Escherichia sp. 3_2_53FAA], gi\|22690... UBIB_ECOL6 - Probable protein kinase UbiB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ubiB ... UBIB_ECOL6 - Probable ubiquinone biosynthesis protein UbiB OS=Escherichia coli O6 GN=ubiB PE=3 SV=1	0.0	[1..546]	[1..546]
gi\|194417706, gi... - gi\|83569329\|ref\|ZP_00920784.1\| COG0661: Predicted unusual protein kinase [Shigella dysenteriae 1012]...	0.0	[1..546]	[1..546]
UBIB_SHISS - Probable protein kinase UbiB OS=Shigella sonnei (strain Ss046) GN=ubiB PE=3 SV=1	0.0	[1..546]	[1..546]
gi\|189373443, gi... - gi\|189373443\|gb\|EDU91859.1\| 2-polyprenylphenol 6-hydroxylase [Escherichia coli O157:H7 str. EC869], ... UBIB_ECOLC - Probable protein kinase UbiB OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=ubiB PE=3... gi\|189001589, gi... - gi\|189001589\|gb\|EDU70575.1\| 2-polyprenylphenol 6-hydroxylase [Escherichia coli O157:H7 str. EC4076],... gi\|195938127 - gi\|195938127\|ref\|ZP_03083509.1\| putative ubiquinone biosynthesis protein UbiB [Escherichia coli O157... UBIB_ECODH - Probable protein kinase UbiB OS=Escherichia coli (strain K12 / DH10B) GN=ubiB PE=3 SV=1 gi\|208733567, gi... - gi\|208812290\|ref\|ZP_03253619.1\| 2-polyprenylphenol 6-hydroxylase [Escherichia coli O157:H7 str. EC40... gi\|208727796, gi... - gi\|208807995\|ref\|ZP_03250332.1\| 2-polyprenylphenol 6-hydroxylase [Escherichia coli O157:H7 str. EC42... UBIB_ECO5E - Probable protein kinase UbiB OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=ubiB PE=3 SV=1 gi\|208820947, gi... - gi\|208820947\|ref\|ZP_03261267.1\| 2-polyprenylphenol 6-hydroxylase [Escherichia coli O157:H7 str. EC40... gi\|75230796, gi\|... - gi\|75230796\|ref\|ZP_00717259.1\| COG0661: Predicted unusual protein kinase [Escherichia coli B7A], gi\|... EG11476 - regulator of octaprenylphenol hydroxylation, ubiquinone synthesis; regulator of 2'-N-acetyltransfera... gi\|192958594, gi... - gi\|75238285\|ref\|ZP_00722284.1\| COG0661: Predicted unusual protein kinase [Escherichia coli E110019],... gi\|193065683, gi... - gi\|75256241\|ref\|ZP_00727919.1\| COG0661: Predicted unusual protein kinase [Escherichia coli E22], gi\|... gi\|168750347, gi... - gi\|188015449\|gb\|EDU53571.1\| 2-polyprenylphenol 6-hydroxylase [Escherichia coli O157:H7 str. EC4113],... gi\|188494035, gi... - gi\|75512610\|ref\|ZP_00735122.1\| COG0661: Predicted unusual protein kinase [Escherichia coli 53638], g... UBIB_SHIDS - Probable protein kinase UbiB OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ubiB PE=3 SV=1 gi\|168763966, gi... - gi\|189365980\|gb\|EDU84396.1\| 2-polyprenylphenol 6-hydroxylase [Escherichia coli O157:H7 str. EC4501],... UBIB_SHIBS - Probable protein kinase UbiB OS=Shigella boydii serotype 4 (strain Sb227) GN=ubiB PE=3 SV=1 gi\|168753738, gi... - gi\|189358933\|gb\|EDU77352.1\| 2-polyprenylphenol 6-hydroxylase [Escherichia coli O157:H7 str. EC4401],... gi\|85676216, gi\|... - gi\|89110185\|ref\|AP_003965.1\| 2-octaprenylphenol hydroxylase [Escherichia coli str. K-12 substr. W311... gi\|168775608, gi... - gi\|187768854\|gb\|EDU32698.1\| 2-polyprenylphenol 6-hydroxylase [Escherichia coli O157:H7 str. EC4196],... gi\|189362586, gi... - gi\|189362586\|gb\|EDU81005.1\| 2-polyprenylphenol 6-hydroxylase [Escherichia coli O157:H7 str. EC4486],... UBIB_SHIFL - Probable protein kinase UbiB OS=Shigella flexneri GN=ubiB PE=3 SV=1 gi\|194422395, gi... - gi\|83585904\|ref\|ZP_00924543.1\| COG0661: Predicted unusual protein kinase [Escherichia coli 101-1], g... gi\|30043128, gi\|... - gi\|30064868\|ref\|NP_839039.1\| putative ubiquinone biosynthesis protein UbiB [Shigella flexneri 2a str... UBIB_SHIB3 - Probable protein kinase UbiB OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=ubiB PE=... gi\|24115131, gi\|... - gi\|24115131\|ref\|NP_709641.1\| putative ubiquinone biosynthesis protein UbiB [Shigella flexneri 2a str... UBIB_ECO24 - Probable protein kinase UbiB OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ubiB PE=3 SV=1 UBIB_ECOBW - Probable protein kinase UbiB OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=ubiB PE=3 SV=1 EG11476 - regulator of octaprenylphenol hydroxylation, ubiquinone synthesis; regulator of 2'-N-acetyltransfera... UBIB_ECOHS - Probable protein kinase UbiB OS=Escherichia coli O9:H4 (strain HS) GN=ubiB PE=3 SV=1 gi\|251787107, gi... - gi\|251787107\|ref\|YP_003001411.1\| hypothetical protein B21_03677 [Escherichia coli BL21], gi\|24237938... UBIB_ECO57 - Probable protein kinase UbiB OS=Escherichia coli O157:H7 GN=ubiB PE=3 SV=1 gi\|75209538, gi\|... - gi\|75209538\|ref\|ZP_00709759.1\| COG0661: Predicted unusual protein kinase [Escherichia coli B171], gi... gi\|253326568, gi... - gi\|254290544\|ref\|YP_003056292.1\| putative ubiquinone biosynthesis protein UbiB [Escherichia coli BL2... UBIB_ECOLI - Probable ubiquinone biosynthesis protein ubiB - Escherichia coli gi\|217320919, gi... - gi\|217324698\|ref\|ZP_03440782.1\| 2-polyprenylphenol 6-hydroxylase [Escherichia coli O157:H7 str. TW14... gi\|254163794, gi... - gi\|254163794\|ref\|YP_003046902.1\| putative ubiquinone biosynthesis protein UbiB [Escherichia coli B s... gi\|12518712, gi\|... - gi\|15804427\|ref\|NP_290467.1\| putative ubiquinone biosynthesis protein UbiB [Escherichia coli O157:H7... UBIB_ECOSE - Probable protein kinase UbiB OS=Escherichia coli (strain SE11) GN=ubiB PE=3 SV=1 gi\|254795833, gi... - gi\|254795833\|ref\|YP_003080670.1\| 2-octaprenylphenol hydroxylase of ubiquinone biosynthetic pathway [... UBIB_ECO55 - Probable protein kinase UbiB OS=Escherichia coli (strain 55989 / EAEC) GN=ubiB PE=3 SV=1 UBIB_ECO8A - Probable protein kinase UbiB OS=Escherichia coli O8 (strain IAI1) GN=ubiB PE=3 SV=1 gi\|13364241, gi\|... - gi\|15834019\|ref\|NP_312792.1\| putative ubiquinone biosynthesis protein UbiB [Escherichia coli O157:H7... UBIB_SHIF8 - Probable protein kinase UbiB OS=Shigella flexneri serotype 5b (strain 8401) GN=ubiB PE=3 SV=1 gi\|124530428, gi... - gi\|124530428\|ref\|ZP_01701086.1\| 2-polyprenylphenol 6-hydroxylase [Escherichia coli B], gi\|124499194\|...	0.0	[1..546]	[1..546]
UBIB_VIBPA - Probable ubiquinone biosynthesis protein UbiB OS=Vibrio parahaemolyticus GN=ubiB PE=3 SV=1 UBIB_VIBPA - Probable protein kinase UbiB OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=ubiB...	0.0	[1..546]	[1..543]
gi\|151938911, gi... - gi\|75856472\|ref\|ZP_00764100.1\| COG0661: Predicted unusual protein kinase [Vibrio sp. Ex25], gi\|25422...	0.0	[1..546]	[1..543]
gi\|91190179, gi\|... - gi\|91224933\|ref\|ZP_01260192.1\| putative ubiquinone biosynthesis protein UbiB [Vibrio alginolyticus 1...	0.0	[1..546]	[1..543]
UBIB_VIBVY - Probable protein kinase UbiB OS=Vibrio vulnificus (strain YJ016) GN=ubiB PE=3 SV=1	0.0	[1..546]	[1..543]
UBIB_VIBVU - Probable protein kinase UbiB OS=Vibrio vulnificus (strain CMCP6) GN=ubiB PE=3 SV=1 UBIB_VIBVU - Probable ubiquinone biosynthesis protein UbiB OS=Vibrio vulnificus GN=ubiB PE=3 SV=1	0.0	[1..546]	[1..543]
gi\|77978478 - gi\|77978478\|ref\|ZP_00833906.1\| COG0661: Predicted unusual protein kinase [Yersinia intermedia ATCC 2...	0.0	[1..544]	[1..541]

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Predicted Domain #1

Region A:
Residues: [1-457]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPGEVRRLY FIIRTFLSYG LDELIPRMRL TLPLRLWRYS LFWMPNRHKD KLLGERLRLA  60
   61 LQELGPVWIK FGQMLSTRRD LFPPQIADQL ALLQDKVAPF DGRLAKAQIE EAMGGLPVEA 120
  121 WFDDFDIQPL ASASIAQVHT ARLKSNGKEV VIKVIRPDIL PVIQADLKLI YRLARWVPRL 180
  181 LPDGRRLRPT EVVREYEKTL IDELNLLRES ANAIQLRRNF ENSPMLYIPE VYSDYCSQNM 240
  241 MVMERIYGIP VSDVAALEKN GTNMKLLAER GVKVFFTQVF RDSFFHADMH PGNIFVSHEH 300
  301 PENPQYIGID CGIVGSLNKE DKRYLAENFI AFFNRDYRKV AELHVDSGWV PPDTNVEDFE 360
  361 FAIRTVCEPI FEKPLAEISF GHVLLNLFNT ARRFNMEVQP QLVLLQKTLL YVEGVGRQLY 420
  421 PQLDLWKTAK PFLESWIKDQ VGIPALTRAL KEKAPFW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.39794
Match:	2acxA
Description:	No description for 2acxA was found.

Predicted Domain #2

Region A:
Residues: [458-546]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VEKMPEIPEL VYDSLRQGKY LQHSVDKIAR ELQVNHVRQS QSRYLLGIGA TLLLSGSFLL  60
   61 VNRPEWGLMP GWLMVGGVVV WLVGWRKTR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.668	a.29.2	Bromodomain
View	Download	0.613	a.24.9	alpha-catenin/vinculin
View	Download	0.572	a.130.1	Chorismate mutase II
View	Download	0.854	e.20.1	Heat shock protein 70kD (HSP70), C-terminal substrate-binding fragment
View	Download	0.564	a.29.2	Bromodomain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits