YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220960346, gi...
Organism:	synthetic construct
Length:	228 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220960346, gi....

Description	E-value	Query Range	Subject Range
RpS5b-PA - The gene Ribosomal protein S5b is referred to in FlyBase by the symbol Dmel\RpS5b (CG7014, FBgn00382... gi\|220948108, gi... - gi\|220957354\|gb\|ACL91220.1\| RpS5b-PA [synthetic construct], gi\|220948108\|gb\|ACL86597.1\| RpS5b-PA [sy...	290.0	[0..4]	[228..1]
gi\|16566728 - gi\|16566728\|gb\|AAL26581.1\|AF429979_1 ribosomal protein S5 [Spodoptera frugiperda]	288.0	[0..4]	[228..1]
gi\|62125845 - gi\|62125845\|gb\|AAX63830.1\| ribosomal protein S5 [Trichoplusia ni]	288.0	[0..4]	[228..1]
gi\|54609291, gi\|... - gi\|54609291\|gb\|AAV34861.1\| ribosomal protein S5 [Bombyx mori], gi\|112984070\|ref\|NP_001037259.1\| ribo...	288.0	[0..4]	[228..1]
gi\|29825585 - gi\|29825585\|gb\|AAO92286.1\| 40S ribosomal protein S5 [Dermacentor variabilis]	287.0	[0..19]	[228..1]
gi\|109460985, gi... - gi\|109460985\|ref\|XP_001062647.1\| PREDICTED: similar to ribosomal protein S5 [Rattus norvegicus], gi\|...	282.0	[0..29]	[228..56]
gi\|15294021 - gi\|15294021\|gb\|AAK95187.1\|AF402813_1 40S ribosomal protein S5 [Ictalurus punctatus]	279.0	[0..25]	[228..2]
gi\|48120555, gi\|... - gi\|66509908\|ref\|XP_624084.1\| PREDICTED: similar to ribosomal protein S5 isoform 2 [Apis mellifera], ...	279.0	[0..23]	[228..11]
gi\|61369836 - gi\|61369836\|gb\|AAX43400.1\| ribosomal protein S5 [synthetic construct]	279.0	[0..29]	[228..5]
gi\|109126282, gi... - gi\|109126284\|ref\|XP_001097103.1\| PREDICTED: similar to ribosomal protein S5 isoform 2 [Macaca mulatt... CCDS12978.1_1 - null gi\|123981762, gi... - gi\|61359863\|gb\|AAX41778.1\| ribosomal protein S5 [synthetic construct], gi\|123996585\|gb\|ABM85894.1\| r... RPS5 - ribosomal protein S5 ENSCJAT00000000563 - null gi\|194216174 - gi\|194216174\|ref\|XP_001495410.2\| PREDICTED: similar to ribosomal protein S5 [Equus caballus] gi\|114679433, gi... - gi\|114679433\|ref\|XP_001147216.1\| PREDICTED: similar to ribosomal protein S5 isoform 3 [Pan troglodyt... gi\|73946777, gi\|... - gi\|73946777\|ref\|XP_861863.1\| PREDICTED: similar to ribosomal protein S5 isoform 5 [Canis familiaris]... RS5_BOVIN - 40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3 tr\|G1TFM5\|G1TFM5... - pep:novel scaffold:oryCun2:GL018763:1362295:1367921:1 gene:ENSOCUG00000024505 transcript:ENSOCUT0000...	278.0	[0..29]	[228..5]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEVAENVVE TFEEPAAPME AEVAETILET NVVSTTELPE IKLFGRWSCD DVTVNDISLQ  60
   61 DYISVKEKFA RYLPH

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.12
Match:	1iqvA
Description:	Ribosomal protein S7
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [76-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAGRYAAKRF RKAQCPIVER LTCSLMMKGR NNGKKLMACR IVKHSFEIIH LLTGENPLQI  60
   61 LVSAIINSGP REDSTRIGRA GTVRRQAVDV SPLRRVNQAI WLLCTGAREA AFRNIKTIAE 120
  121 CLADELINAA KGSSNSYAIK KKDELERVAK SNR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.154902
Match:	1s1hG
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits