YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213580305
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-0664
Length:	153 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213580305.

Description	E-value	Query Range	Subject Range
gi\|194418716, gi... - gi\|83569910\|ref\|ZP_00921358.1\| hypothetical protein Sdys1_01001786 [Shigella dysenteriae 1012], gi\|1... gi\|157162171, gi... - gi\|75196700\|ref\|ZP_00706770.1\| hypothetical protein EcolH_01002511 [Escherichia coli HS], gi\|1571621... gi\|157156901, gi... - gi\|75187447\|ref\|ZP_00700714.1\| hypothetical protein EcolE_01000678 [Escherichia coli E24377A], gi\|15... HYCA_ECOLI - Formate hydrogenlyase regulatory protein hycA - Escherichia coli HYCA_SHIFL - Formate hydrogenlyase regulatory protein HycA OS=Shigella flexneri GN=hycA PE=3 SV=1 gi\|24053136, gi\|... - gi\|24114016\|ref\|NP_708526.1\| formate hydrogenlyase regulatory protein HycA [Shigella flexneri 2a str... gi\|30064079, gi\|... - gi\|30064079\|ref\|NP_838250.1\| formate hydrogenlyase regulatory protein HycA [Shigella flexneri 2a str... HYCA_ECO57 - Formate hydrogenlyase regulatory protein HycA OS=Escherichia coli O157:H7 GN=hycA PE=3 SV=1 EG10474 - regulator of the transcriptional regulator FhlA / Regulatory gene for hyc and hyp operons; counterac... gi\|12517176, gi\|... - gi\|15803242\|ref\|NP_289274.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli O157:H7... gi\|188015771, gi... - gi\|188015771\|gb\|EDU53893.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli O157:H7 ... gi\|189357340, gi... - gi\|189357340\|gb\|EDU75759.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli O157:H7 ... gi\|254594065, gi... - gi\|254794665\|ref\|YP_003079502.1\| regulator of the transcriptional regulator FhlA [Escherichia coli O... gi\|168762875, gi... - gi\|189366885\|gb\|EDU85301.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli O157:H7 ... gi\|254037765, gi... - gi\|254037765\|ref\|ZP_04871823.1\| formate hydrogenlyase regulatory protein hycA [Escherichia sp. 1_1_4... gi\|168768817, gi... - gi\|189362002\|gb\|EDU80421.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli O157:H7 ... gi\|238901862, gi... - gi\|238901862\|ref\|YP_002927658.1\| regulator of the transcriptional regulator FhlA [Escherichia coli B... gi\|168774742, gi... - gi\|187769539\|gb\|EDU33383.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli O157:H7 ... gi\|189003202, gi... - gi\|189003202\|gb\|EDU72188.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli O157:H7 ... gi\|209398474, gi... - gi\|209398474\|ref\|YP_002272188.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli O15... gi\|209920164, gi... - gi\|209920164\|ref\|YP_002294248.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli SE1... gi\|13363052, gi\|... - gi\|15832835\|ref\|NP_311608.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli O157:H7... gi\|217319082, gi... - gi\|217326715\|ref\|ZP_03442798.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli O157... gi\|110616196, gi... - gi\|110806648\|ref\|YP_690168.1\| formate hydrogenlyase regulatory protein HycA [Shigella flexneri 5 str... gi\|218362037, gi... - gi\|218555269\|ref\|YP_002388182.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli IAI... gi\|218696319, gi... - gi\|218696319\|ref\|YP_002403986.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli 559... gi\|218371203, gi... - gi\|218701217\|ref\|YP_002408846.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli IAI... gi\|218433316, gi... - gi\|218706219\|ref\|YP_002413738.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli UMN... gi\|190903143, gi... - gi\|75230069\|ref\|ZP_00716579.1\| hypothetical protein EcolB7_01001758 [Escherichia coli B7A], gi\|19116... gi\|124500983, gi... - gi\|124528091\|ref\|ZP_01699444.1\| transcriptional repression of hyc and hyp operons [Escherichia coli ... gi\|168787981, gi... - gi\|189372118\|gb\|EDU90534.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli O157:H7 ... gi\|194427876, gi... - gi\|75210926\|ref\|ZP_00711050.1\| hypothetical protein EcolB_01001991 [Escherichia coli B171], gi\|19442... gi\|189377468, gi... - gi\|189377468\|gb\|EDU95884.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli O157:H7 ... gi\|75256927, gi\|... - gi\|75256927\|ref\|ZP_00728503.1\| hypothetical protein EcolE2_01003176 [Escherichia coli E22], gi\|19306... gi\|169753957, gi... - gi\|170019029\|ref\|YP_001723983.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli ATC... gi\|193069654, gi... - gi\|75235680\|ref\|ZP_00719854.1\| hypothetical protein EcolE1_01002664 [Escherichia coli E110019], gi\|1... gi\|169890136, gi... - gi\|170082301\|ref\|YP_001731621.1\| regulator of the transcriptional regulator FhlA [Escherichia coli s... gi\|85675546, gi\|... - gi\|89109512\|ref\|AP_003292.1\| regulator of the transcriptional regulator FhlA [Escherichia coli str. ... gi\|195938476 - gi\|195938476\|ref\|ZP_03083858.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli O157... gi\|188487933, gi... - gi\|75512365\|ref\|ZP_00734917.1\| hypothetical protein Ecol5_01003460 [Escherichia coli 53638], gi\|1884... gi\|208726026, gi... - gi\|208806225\|ref\|ZP_03248562.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli O157... EG10474 - regulator of the transcriptional regulator FhlA / Regulatory gene for hyc and hyp operons; counterac... gi\|208814552, gi... - gi\|208814552\|ref\|ZP_03255881.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli O157... gi\|208738609, gi... - gi\|208818486\|ref\|ZP_03258806.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli O157...	1.0E-79	[1..152]	[1..152]
gi\|227888263, gi... - gi\|227888263\|ref\|ZP_04006068.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli 8397... gi\|215266113, gi... - gi\|215488041\|ref\|YP_002330472.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli O12... gi\|218690849, gi... - gi\|218690849\|ref\|YP_002399061.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli ED1... gi\|75241669, gi\|... - gi\|75241669\|ref\|ZP_00725506.1\| hypothetical protein EcolF_01001376 [Escherichia coli F11], gi\|191171... gi\|26249124, gi\|... - gi\|26249124\|ref\|NP_755164.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli CFT073]...	4.0E-79	[1..151]	[1..151]
gi\|187428667, gi... - gi\|75176414\|ref\|ZP_00696558.1\| hypothetical protein SboyB_01003644 [Shigella boydii BS512], gi\|18773... gi\|218559715, gi... - gi\|218559715\|ref\|YP_002392628.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli S88... gi\|237706651, gi... - gi\|237706651\|ref\|ZP_04537132.1\| formate hydrogenlyase regulatory protein HycA [Escherichia sp. 3_2_5... gi\|117624957, gi... - gi\|117624957\|ref\|YP_853945.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli APEC O... gi\|91212085, gi\|... - gi\|91212085\|ref\|YP_542071.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli UTI89],...	5.0E-79	[1..152]	[1..152]
gi\|251786008, gi... - gi\|251786008\|ref\|YP_003000312.1\| hypothetical protein B21_02540 [Escherichia coli BL21], gi\|24237828... gi\|194422055, gi... - gi\|83585616\|ref\|ZP_00924259.1\| hypothetical protein Ecol1_01003195 [Escherichia coli 101-1], gi\|1944... gi\|253974557, gi... - gi\|254162656\|ref\|YP_003045764.1\| regulator of the transcriptional regulator FhlA [Escherichia coli B... gi\|254289417, gi... - gi\|254289417\|ref\|YP_003055165.1\| regulator of the transcriptional regulator FhlA [Escherichia coli B...	6.0E-79	[1..152]	[1..152]
gi\|74313292, gi\|... - gi\|74313292\|ref\|YP_311711.1\| formate hydrogenlyase regulatory protein HycA [Shigella sonnei Ss046], ...	7.0E-79	[1..152]	[1..152]
gi\|110344440, gi... - gi\|110642848\|ref\|YP_670578.1\| formate hydrogenlyase regulatory protein HycA [Escherichia coli 536], ...	1.0E-78	[1..151]	[1..151]
gi\|81242239, gi\|... - gi\|82778091\|ref\|YP_404440.1\| formate hydrogenlyase regulatory protein HycA [Shigella dysenteriae Sd1...	1.0E-78	[1..152]	[1..152]
gi\|81246613, gi\|... - gi\|82545202\|ref\|YP_409149.1\| membrane-spanning protein of hydrogenase 3 [Shigella boydii Sb227], gi\|...	2.0E-48	[1..87]	[1..87]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIWEISEKA DYIAQRHRRL QDQWHIYCNS LVQGITLSKA RLHHAMSCAP ERDLCFVLFE  60
   61 HFRIYVALAD GFNSHTIEYY VETKDGEDKQ LIAQAQLDID GKVDERVNNR DREQVLEHYL 120
  121 EKIASVYDSL YTAVETNSPV NLRQLVKGHS PAV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits