YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213850396
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. M223
Length:	91 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213850396.

Description	E-value	Query Range	Subject Range
gi\|62179892, gi\|... - gi\|62179892\|ref\|YP_216309.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serov...	3.0E-38	[1..91]	[1..91]
gi\|56413714, gi\|... - gi\|56413714\|ref\|YP_150789.1\| hypothetical protein SPA1544 [Salmonella enterica subsp. enterica serov... gi\|197362637, gi... - gi\|197362637\|ref\|YP_002142274.1\| hypothetical protein SSPA1435 [Salmonella enterica subsp. enterica ...	7.0E-38	[1..91]	[1..91]
lcl\|NC_016856.1_... - [gene=STM14_1578] [protein=hypothetical protein] [protein_id=YP_005237153.1] [location=1390194..1390... gi\|16764651, gi\|... - gi\|16764651\|ref\|NP_460266.1\| putative periplasmic protein [Salmonella typhimurium LT2], gi\|16419817\|... gi\|197241192, gi... - gi\|197262937\|ref\|ZP_03163011.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|167991884, gi... - gi\|205329707\|gb\|EDZ16471.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serova...	1.0E-37	[1..90]	[1..90]
gi\|124499514, gi... - gi\|124529961\|ref\|ZP_01700773.1\| protein of unknown function DUF1496 [Escherichia coli B], gi\|1244995... EG14010 - DUF1496 family protein / Putative secreted protein, function unknown; DUF1496 family gi\|169754821, gi... - gi\|170019893\|ref\|YP_001724847.1\| hypothetical protein EcolC_1872 [Escherichia coli ATCC 8739], gi\|16... gi\|242377481, gi... - gi\|251785208\|ref\|YP_002999512.1\| hypothetical protein B21_01717 [Escherichia coli BL21], gi\|24237748... gi\|238862878, gi... - gi\|238900974\|ref\|YP_002926770.1\| hypothetical protein BWG_1573 [Escherichia coli BW2952], gi\|2388628... gi\|253973719, gi... - gi\|254161818\|ref\|YP_003044926.1\| hypothetical protein ECB_01729 [Escherichia coli B str. REL606], gi... gi\|253977913, gi... - gi\|254288606\|ref\|YP_003054354.1\| hypothetical protein ECD_01729 [Escherichia coli BL21(DE3)], gi\|253... gi\|194422545, gi... - gi\|194438535\|ref\|ZP_03070624.1\| conserved hypothetical protein [Escherichia coli 101-1], gi\|19442254... EG14010 - DUF1496 family protein / Putative secreted protein, function unknown; DUF1496 family gi\|89108599, gi\|... - gi\|89108599\|ref\|AP_002379.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|170081417, gi... - gi\|170081417\|ref\|YP_001730737.1\| hypothetical protein ECDH10B_1898 [Escherichia coli str. K-12 subst... YNJH_ECOLI - Hypothetical protein ynjH precursor - Escherichia coli	7.0E-36	[1..91]	[1..90]
gi\|190900917, gi... - gi\|191169035\|ref\|ZP_03030799.1\| conserved hypothetical protein [Escherichia coli B7A], gi\|190900917\|... gi\|193065781, gi... - gi\|193065781\|ref\|ZP_03046844.1\| conserved hypothetical protein [Escherichia coli E22], gi\|192926553\|... gi\|24051783, gi\|... - gi\|24112845\|ref\|NP_707355.1\| hypothetical protein SF1465 [Shigella flexneri 2a str. 301], gi\|2405178... gi\|30041226, gi\|... - gi\|30062977\|ref\|NP_837148.1\| hypothetical protein S1580 [Shigella flexneri 2a str. 2457T], gi\|300412... gi\|187732833, gi... - gi\|187732833\|ref\|YP_001880556.1\| hypothetical protein SbBS512_E2012 [Shigella boydii CDC 3083-94], g... gi\|110614982, gi... - gi\|110805434\|ref\|YP_688954.1\| hypothetical protein SFV_1458 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|81245248, gi\|... - gi\|82543837\|ref\|YP_407784.1\| hypothetical protein SBO_1329 [Shigella boydii Sb227], gi\|81245248\|gb\|A... gi\|194418267, gi... - gi\|194433504\|ref\|ZP_03065782.1\| conserved hypothetical protein [Shigella dysenteriae 1012], gi\|19441... gi\|209912381, gi... - gi\|209919122\|ref\|YP_002293206.1\| hypothetical protein ECSE_1931 [Escherichia coli SE11], gi\|20991238... gi\|193068947, gi... - gi\|193068947\|ref\|ZP_03049906.1\| conserved hypothetical protein [Escherichia coli E110019], gi\|192957... gi\|74311922, gi\|... - gi\|74311922\|ref\|YP_310341.1\| hypothetical protein SSON_1396 [Shigella sonnei Ss046], gi\|73855399\|gb\|... gi\|194428503, gi... - gi\|194428503\|ref\|ZP_03061042.1\| conserved hypothetical protein [Escherichia coli B171], gi\|194413381...	8.0E-36	[1..91]	[1..90]
gi\|218554326, gi... - gi\|218554326\|ref\|YP_002387239.1\| hypothetical protein ECIAI1_1821 [Escherichia coli IAI1], gi\|218361... gi\|82776795, gi\|... - gi\|82776795\|ref\|YP_403144.1\| hypothetical protein SDY_1515 [Shigella dysenteriae Sd197], gi\|81240943... gi\|188495471, gi... - gi\|188495471\|ref\|ZP_03002741.1\| conserved hypothetical protein [Escherichia coli 53638], gi\|18849067... gi\|157157965, gi... - gi\|157157965\|ref\|YP_001463058.1\| hypothetical protein EcE24377A_1982 [Escherichia coli E24377A], gi\|...	1.0E-35	[1..91]	[1..90]
gi\|91210977, gi\|... - gi\|91210977\|ref\|YP_540963.1\| hypothetical protein UTI89_C1956 [Escherichia coli UTI89], gi\|91072551\|... gi\|237705711, gi... - gi\|237705711\|ref\|ZP_04536192.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|115513056, gi... - gi\|117623932\|ref\|YP_852845.1\| hypothetical protein APECO1_830 [Escherichia coli APEC O1], gi\|1155130... gi\|26108418, gi\|... - gi\|26248015\|ref\|NP_754055.1\| hypothetical protein c2161 [Escherichia coli CFT073], gi\|26108418\|gb\|AA... gi\|227837387, gi... - gi\|227885814\|ref\|ZP_04003619.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783738...	4.0E-35	[1..91]	[1..90]
gi\|191171753, gi... - gi\|191171753\|ref\|ZP_03033300.1\| conserved hypothetical protein [Escherichia coli F11], gi\|190908083\|... gi\|110343472, gi... - gi\|110641880\|ref\|YP_669610.1\| hypothetical protein ECP_1706 [Escherichia coli 536], gi\|110343472\|gb\|...	1.0E-34	[1..91]	[1..90]
gi\|188016223, gi... - gi\|188016223\|gb\|EDU54345.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|168756769, gi... - gi\|189356220\|gb\|EDU74639.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|168762169, gi... - gi\|189367447\|gb\|EDU85863.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189360366, gi... - gi\|189360366\|gb\|EDU78785.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|209768438, gi... - pir\|\|F85785 hypothetical protein Z2792 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|254592778, gi... - gi\|254793378\|ref\|YP_003078215.1\| hypothetical protein ECSP_2328 [Escherichia coli O157:H7 str. TW143... gi\|12515782, gi\|... - gi\|15802171\|ref\|NP_288193.1\| hypothetical protein Z2792 [Escherichia coli O157:H7 EDL933], gi\|125157... gi\|13361933, gi\|... - gi\|15831720\|ref\|NP_310493.1\| hypothetical protein ECs2466 [Escherichia coli O157:H7], gi\|13361933\|db... gi\|209157316, gi... - gi\|209395916\|ref\|YP_002270830.1\| hypothetical protein ECH74115_2478 [Escherichia coli O157:H7 str. E... gi\|217318334, gi... - gi\|217328987\|ref\|ZP_03445068.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|195937446 - gi\|195937446\|ref\|ZP_03082828.1\| hypothetical protein EscherichcoliO157_13512 [Escherichia coli O157:... gi\|208725292, gi... - gi\|208810776\|ref\|ZP_03252652.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|208731133, gi... - gi\|208816790\|ref\|ZP_03257910.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208740460, gi... - gi\|208820337\|ref\|ZP_03260657.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|187769482, gi... - gi\|187769482\|gb\|EDU33326.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|189000364, gi... - gi\|189000364\|gb\|EDU69350.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|189372045, gi... - gi\|189372045\|gb\|EDU90461.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|13361933, gi\|... - gi\|15831720\|ref\|NP_310493.1\| hypothetical protein ECs2466 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|189377533, gi... - gi\|189377533\|gb\|EDU95949.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi...	2.0E-29	[1..91]	[1..90]
gi\|27359521, gi\|... - gi\|27367948\|ref\|NP_763475.1\| hypothetical protein VV2_1605 [Vibrio vulnificus CMCP6], gi\|27359521\|gb...	1.0E-26	[1..90]	[1..94]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRSLMVAVM AIMPMVGLAN QNSRPDIQVN VPPEVFSTRG QSSQPCIQCC VYQDQNYSEG  60
   61 AVIKVEGVVL QCQRDEKTIS TNPLVWRRVK P

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	66.337242
Match:	PF07383.3
Description:	No description for PF07383.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits