YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213974752
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. AG3
Length:	277 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213974752.

Description	E-value	Query Range	Subject Range
gi\|168756703, gi... - gi\|189356148\|gb\|EDU74567.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|188014133, gi... - gi\|188014133\|gb\|EDU52255.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|189360653, gi... - gi\|189360653\|gb\|EDU79072.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|168762234, gi... - gi\|189367489\|gb\|EDU85905.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|24051846, gi\|... - gi\|24112900\|ref\|NP_707410.1\| hypothetical protein SF1527 [Shigella flexneri 2a str. 301], gi\|2405184... PSRP_SHIFL - Phosphoenolpyruvate synthase regulatory protein OS=Shigella flexneri GN=ppsR PE=3 SV=1 gi\|30041279, gi\|... - gi\|30063030\|ref\|NP_837201.1\| hypothetical protein S1645 [Shigella flexneri 2a str. 2457T], gi\|300412... PSRP_ECOL6 - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 7009... EG11132 - PEP synthase kinase and PEP synthase pyrophosphorylase / PEP synthase regulatory protein PSRP; bifun... PSRP_ECO57 - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli O157:H7 GN=ppsR PE=3 SV=1 gi\|192927117, gi... - gi\|75256661\|ref\|ZP_00728278.1\| COG1806: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|85675084, gi\|... - gi\|89108543\|ref\|AP_002323.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... PSRP_ECO24 - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli O139:H28 (strain E24377A / ETEC)... PSRP_ECOHS - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli O9:H4 (strain HS) GN=ppsR PE=3 S... PSRP_ECOK1 - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli O1:K1 / APEC GN=ppsR PE=3 SV=1 PSRP_SHIDS - Phosphoenolpyruvate synthase regulatory protein OS=Shigella dysenteriae serotype 1 (strain Sd197) GN... gi\|124498951, gi... - gi\|124530848\|ref\|ZP_01701353.1\| protein of unknown function DUF299 [Escherichia coli B], gi\|12449895... PSRP_SHISS - Phosphoenolpyruvate synthase regulatory protein OS=Shigella sonnei (strain Ss046) GN=ppsR PE=3 SV=1 YDIA_ECOL6 - Putative phosphotransferase ydiA OS=Escherichia coli O6 GN=ydiA PE=3 SV=1 YDIA_ECOLI - UPF0085 protein ydiA - Escherichia coli gi\|15802115, gi\|... - gi\|15802115\|ref\|NP_288137.1\| hypothetical protein Z2732 [Escherichia coli O157:H7 EDL933], gi\|125157... gi\|194416965, gi... - gi\|194434796\|ref\|ZP_03067046.1\| conserved hypothetical protein [Shigella dysenteriae 1012], gi\|19441... gi\|194429483, gi... - gi\|194429483\|ref\|ZP_03062005.1\| conserved hypothetical protein [Escherichia coli B171], gi\|194412447... sp\|B7US42\|YDIA_ECO27 - Putative phosphotransferase ydiA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ydiA PE=3 S... gi\|195937387 - gi\|195937387\|ref\|ZP_03082769.1\| hypothetical protein EscherichcoliO157_13217 [Escherichia coli O157:... PSRP_ECOUT - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli (strain UTI89 / UPEC) GN=ppsR PE... gi\|194438566, gi... - gi\|194438566\|ref\|ZP_03070655.1\| conserved hypothetical protein [Escherichia coli 101-1], gi\|19442257... gi\|208730976, gi... - gi\|208816633\|ref\|ZP_03257753.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208810608, gi... - gi\|208810608\|ref\|ZP_03252484.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... PSRP_ECO5E - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) G... gi\|208741402, gi... - gi\|208821279\|ref\|ZP_03261599.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|189000313, gi... - gi\|189000313\|gb\|EDU69299.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|187769483, gi... - gi\|187769483\|gb\|EDU33327.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... EG11132 - PEP synthase kinase and PEP synthase pyrophosphorylase / PEP synthase regulatory protein PSRP; bifun... PSRP_ECOLC - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / C... gi\|189377604, gi... - gi\|189377604\|gb\|EDU96020.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|168789839, gi... - gi\|189370577\|gb\|EDU88993.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|13361877, gi\|... - gi\|15831664\|ref\|NP_310437.1\| hypothetical protein ECs2410 [Escherichia coli O157:H7 str. Sakai], gi\|... PSRP_ECOSM - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=ppsR... PSRP_SHIF8 - Phosphoenolpyruvate synthase regulatory protein OS=Shigella flexneri serotype 5b (strain 8401) GN=pp... PSRP_ECODH - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli (strain K12 / DH10B) GN=ppsR PE=... gi\|192957790, gi... - gi\|193068995\|ref\|ZP_03049954.1\| conserved hypothetical protein [Escherichia coli E110019], gi\|192957... gi\|188491583, gi... - gi\|188496384\|ref\|ZP_03003654.1\| conserved hypothetical protein [Escherichia coli 53638], gi\|18849158... PSRP_ECO27 - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC)... gi\|227885875, gi... - gi\|227885875\|ref\|ZP_04003680.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783744... PSRP_ECOSE - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli (strain SE11) GN=ppsR PE=3 SV=1 gi\|237705651, gi... - gi\|237705651\|ref\|ZP_04536132.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... PSRP_ECO8A - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli O8 (strain IAI1) GN=ppsR PE=3 SV... PSRP_ECOBW - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli (strain K12 / MC4100 / BW2952) G... gi\|217328785, gi... - gi\|217328785\|ref\|ZP_03444866.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|242377427, gi... - gi\|251785154\|ref\|YP_002999458.1\| hypothetical protein B21_01661 [Escherichia coli BL21], gi\|24237742... PSRP_ECO81 - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli O81 (strain ED1a) GN=ppsR PE=3 S... gi\|253977858, gi... - gi\|254288551\|ref\|YP_003054299.1\| hypothetical protein ECD_01672 [Escherichia coli BL21(DE3)], gi\|253... PSRP_ECO45 - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=p... gi\|253973664, gi... - gi\|254161763\|ref\|YP_003044871.1\| hypothetical protein ECB_01672 [Escherichia coli B str. REL606], gi... gi\|254793320, gi... - gi\|254793320\|ref\|YP_003078157.1\| hypothetical protein ECSP_2270 [Escherichia coli O157:H7 str. TW143... PSRP_ECO55 - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli (strain 55989 / EAEC) GN=ppsR PE...	0.0	[1..277]	[1..277]
PSRP_SHIB3 - Phosphoenolpyruvate synthase regulatory protein OS=Shigella boydii serotype 18 (strain CDC 3083-94 /... PSRP_SHIBS - Phosphoenolpyruvate synthase regulatory protein OS=Shigella boydii serotype 4 (strain Sb227) GN=ppsR...	0.0	[1..277]	[1..277]
PSRP_ECOL5 - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) G... gi\|191171707, gi... - gi\|191171707\|ref\|ZP_03033254.1\| conserved hypothetical protein [Escherichia coli F11], gi\|190908037\|...	0.0	[1..277]	[1..277]
gi\|238796344, gi... - gi\|77962204\|ref\|ZP_00826027.1\| COG1806: Uncharacterized protein conserved in bacteria [Yersinia moll...	0.0	[5..277]	[1..273]
PSRP_CUPPJ - Putative phosphoenolpyruvate synthase regulatory protein OS=Cupriavidus pinatubonensis (strain JMP 1...	0.0	[7..277]	[33..301]
gi\|82737938, gi\|... - gi\|82737938\|ref\|ZP_00900780.1\| conserved hypothetical protein [Pseudomonas putida F1], gi\|82714943\|g...	0.0	[5..275]	[46..315]
gi\|149365680, gi... - gi\|149365680\|ref\|ZP_01887715.1\| hypothetical protein YPE_0849 [Yersinia pestis CA88-4125], gi\|149292... gi\|166210659, gi... - gi\|166210659\|ref\|ZP_02236694.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... PSRP_YERPP - Putative phosphoenolpyruvate synthase regulatory protein OS=Yersinia pestis (strain Pestoides F) GN=... gi\|167049618, gi... - gi\|167400765\|ref\|ZP_02306271.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|45441988, gi\|... - gi\|45441988\|ref\|NP_993527.1\| hypothetical protein YP_2197 [Yersinia pestis biovar Microtus str. 9100... gi\|167422120, gi... - gi\|167422120\|ref\|ZP_02313873.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|21958749, gi\|... - gi\|22125821\|ref\|NP_669244.1\| hypothetical protein y1929 [Yersinia pestis KIM], gi\|21958749\|gb\|AAM854... gi\|167424967, gi... - gi\|167424967\|ref\|ZP_02316720.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|115348111, gi... - gi\|218929500\|ref\|YP_002347375.1\| hypothetical protein YPO2410 [Yersinia pestis CO92], gi\|16122632\|re... gi\|167469407 - gi\|167469407\|ref\|ZP_02334111.1\| hypothetical protein YpesF_16304 [Yersinia pestis FV-1] PSRP_YERPS - Putative phosphoenolpyruvate synthase regulatory protein OS=Yersinia pseudotuberculosis serotype I (... PSRP_YERPY - Putative phosphoenolpyruvate synthase regulatory protein OS=Yersinia pseudotuberculosis serotype O:3... PSRP_YERPB - Putative phosphoenolpyruvate synthase regulatory protein OS=Yersinia pseudotuberculosis serotype IB ... gi\|229688043, gi... - gi\|229898495\|ref\|ZP_04513640.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... gi\|229895094, gi... - gi\|229895094\|ref\|ZP_04510270.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229701856\|gb\|EEO... gi\|229837934, gi... - gi\|229837934\|ref\|ZP_04458093.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|165927531, gi... - gi\|165927531\|ref\|ZP_02223363.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... Y2319_YERPS - Putative phosphotransferase YPTB2319 OS=Yersinia pseudotuberculosis GN=YPTB2319 PE=3 SV=1 gi\|166011818, gi... - gi\|166011818\|ref\|ZP_02232716.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... PSRP_YERPE - Putative phosphoenolpyruvate synthase regulatory protein OS=Yersinia pestis GN=YPO2410 PE=3 SV=1 PSRP_YERP3 - Putative phosphoenolpyruvate synthase regulatory protein OS=Yersinia pseudotuberculosis serotype O:1... gi\|89105358, gi\|... - gi\|89105358\|ref\|ZP_01177879.1\| COG1806: Uncharacterized protein conserved in bacteria [Yersinia pest... PSRP_YERPA - Putative phosphoenolpyruvate synthase regulatory protein OS=Yersinia pestis bv. Antiqua (strain Anti... PSRP_YERPN - Putative phosphoenolpyruvate synthase regulatory protein OS=Yersinia pestis bv. Antiqua (strain Nepa...	0.0	[5..277]	[1..273]
PSRP_ENTAG - Putative phosphoenolpyruvate synthase regulatory protein OS=Enterobacter agglomerans GN=ydiA PE=3 SV...	0.0	[3..277]	[16..290]
YM91_PSESM, Y229... - (Q883Q9) Hypothetical UPF0085 protein PSPTO2291, Putative phosphotransferase PSPTO_2291 OS=Pseudomon... PSRP_PSESM - Putative phosphoenolpyruvate synthase regulatory protein OS=Pseudomonas syringae pv. tomato (strain ... gi\|213927074, gi... - gi\|213968094\|ref\|ZP_03396239.1\| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1],...	0.0	[5..275]	[1..270]
PSRP_PSEAE - Putative phosphoenolpyruvate synthase regulatory protein OS=Pseudomonas aeruginosa (strain ATCC 1569... PSRP_PSEA8 - Putative phosphoenolpyruvate synthase regulatory protein OS=Pseudomonas aeruginosa (strain LESB58) G... gi\|126166795, gi... - gi\|254234864\|ref\|ZP_04928187.1\| conserved hypothetical protein [Pseudomonas aeruginosa C3719], gi\|19... PSRP_PSEAB - Putative phosphoenolpyruvate synthase regulatory protein OS=Pseudomonas aeruginosa (strain UCBPP-PA1... Y1769_PSEAE, YH6... - (Q9I2X0) Hypothetical UPF0085 protein PA1769, Putative phosphotransferase PA1769 OS=Pseudomonas aeru... gi\|194551096, gi... - gi\|254240111\|ref\|ZP_04933433.1\| conserved hypothetical protein [Pseudomonas aeruginosa 2192], gi\|194...	0.0	[3..275]	[1..272]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNVVDRHVF YISDGTAITA EVLGHAVMSQ FPVTISSITL PFVENESRAR AVKDQIDAIY  60
   61 QQTGVRPLVF YSIVLPEIRA IILQSEGFCQ DIVQALVAPL QQEMKLDPTP IAHRTHGLNP 120
  121 GNLNKYDARI AAIDYTLA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	21.886057
Match:	PF03618.5
Description:	No description for PF03618.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.821	N/A	N/A	c.25.1	Ferredoxin reductase-like, C-terminal NADP-linked domain

Predicted Domain #2

Region A:
Residues: [139-277]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HDDGISLRNL DQAQVILLGV SRCGKTPTSL YLAMQFGIRA ANYPFIADDM DNLTLPTSLK  60
   61 PLQHKLFGLT IDPERLAAIR EERRENSRYA SLRQCRMEVA EVEALYRKNQ IPCLNSTNYS 120
  121 VEEIATKILD IMGLNRRMY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.29
Match:	2iyqA
Description:	No description for 2iyqA was found.

Predicted functions:

Term	Confidence	Notes
binding	0.301700930786307	bayes_pls_golite062009
catalytic activity	0.176212702885001	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: