YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213426188
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E02-1180
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213426188.

Description	E-value	Query Range	Subject Range
gi\|253974241, gi... - gi\|254162340\|ref\|YP_003045448.1\| hypothetical protein ECB_02256 [Escherichia coli B str. REL606], gi... gi\|253978408, gi... - gi\|254289101\|ref\|YP_003054849.1\| hypothetical protein ECD_02256 [Escherichia coli BL21(DE3)], gi\|253... YFCN_ECOSM - UPF0115 protein YfcN OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=yfcN PE=3 SV=1 YFCN_ECOLU - UPF0115 protein YfcN OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=yfcN PE=3 SV=1 YFCN_ECOL5 - UPF0115 protein YfcN OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=yfcN PE=3 SV=1 gi\|75243142 - gi\|75243142\|ref\|ZP_00726848.1\| COG2840: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|194424990, gi... - gi\|83588355\|ref\|ZP_00926980.1\| COG2840: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|251785691, gi... - gi\|251785691\|ref\|YP_002999995.1\| hypothetical protein B21_02216 [Escherichia coli BL21], gi\|24237796...	2.0E-54	[1..183]	[1..183]
YFCN_SHIDS - UPF0115 protein YfcN OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=yfcN PE=3 SV=1	2.0E-54	[1..183]	[1..183]
YFCN_SALPK - UPF0115 protein YfcN OS=Salmonella paratyphi A (strain AKU_12601) GN=yfcN PE=3 SV=1 YFCN_SALPA - UPF0115 protein yfcN OS=Salmonella paratyphi A GN=yfcN PE=3 SV=1 YFCN_SALPA - UPF0115 protein YfcN OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=yfcN PE=3 SV=1	2.0E-54	[1..183]	[1..183]
gi\|194418856, gi... - gi\|83570058\|ref\|ZP_00921505.1\| COG2840: Uncharacterized protein conserved in bacteria [Shigella dyse... YFCN_SHIB3 - UPF0115 protein YfcN OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=yfcN PE=3 SV=1 YFCN_ECOUT - UPF0115 protein YfcN OS=Escherichia coli (strain UTI89 / UPEC) GN=yfcN PE=3 SV=1 YFCN_ECO24 - UPF0115 protein YfcN OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=yfcN PE=3 SV=1 gi\|47600716 - gi\|47600716\|emb\|CAE55837.1\| hypothetical protein YfcN [Escherichia coli Nissle 1917] YFCN_ECOHS - UPF0115 protein YfcN OS=Escherichia coli O9:H4 (strain HS) GN=yfcN PE=3 SV=1 YFCN_SHIF8 - UPF0115 protein YfcN OS=Shigella flexneri serotype 5b (strain 8401) GN=yfcN PE=3 SV=1 gi\|75209502, gi\|... - gi\|75209502\|ref\|ZP_00709727.1\| COG2840: Uncharacterized protein conserved in bacteria [Escherichia c... YFCN_ECOL6 - UPF0115 protein yfcN OS=Escherichia coli O6 GN=yfcN PE=3 SV=1 sp\|B7UFY9\|YFCN_ECO27 - UPF0115 protein yfcN OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yfcN PE=3 SV=1 YFCN_ECOL6 - UPF0115 protein YfcN OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yfcN PE=3 SV=... gi\|30042012, gi\|... - gi\|30063757\|ref\|NP_837928.1\| hypothetical protein S2541 [Shigella flexneri 2a str. 2457T], gi\|300420... YFCN_SHIFL - UPF0115 protein YfcN OS=Shigella flexneri GN=yfcN PE=3 SV=1 gi\|24052772, gi\|... - gi\|24113703\|ref\|NP_708213.1\| hypothetical protein SF2406 [Shigella flexneri 2a str. 301], gi\|2405277... YFCN_ECOLC - UPF0115 protein YfcN OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=yfcN PE=3 SV=1 gi\|124502015, gi... - gi\|124526544\|ref\|ZP_01698497.1\| Smr protein/MutS2 [Escherichia coli B], gi\|124502015\|gb\|EAY49476.1\| ... YFCN_ECO81 - UPF0115 protein YfcN OS=Escherichia coli O81 (strain ED1a) GN=yfcN PE=3 SV=1 EG14117 - putative DNA endonuclease / Predicted DNA endonuclease, function unknown YFCN_ECODH - UPF0115 protein YfcN OS=Escherichia coli (strain K12 / DH10B) GN=yfcN PE=3 SV=1 YFCN_ECO27 - UPF0115 protein YfcN OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yfcN PE=3 SV=1 YFCN_ECOSE - UPF0115 protein YfcN OS=Escherichia coli (strain SE11) GN=yfcN PE=3 SV=1 YFCN_ECO45 - UPF0115 protein YfcN OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=yfcN PE=3 SV=1 YFCN_ECO8A - UPF0115 protein YfcN OS=Escherichia coli O8 (strain IAI1) GN=yfcN PE=3 SV=1 EG14117 - putative DNA endonuclease / Predicted DNA endonuclease, function unknown gi\|227887391, gi... - gi\|227887391\|ref\|ZP_04005196.1\| Smr domain protein [Escherichia coli 83972], gi\|227835741\|gb\|EEJ4620... YFCN_ECOLI - UPF0115 protein yfcN - Escherichia coli gi\|226901176, gi... - gi\|237704810\|ref\|ZP_04535291.1\| yfcN [Escherichia sp. 3_2_53FAA], gi\|226901176\|gb\|EEH87435.1\| yfcN [... YFCN_ECOBW - UPF0115 protein YfcN OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=yfcN PE=3 SV=1 gi\|75231402, gi\|... - gi\|75231402\|ref\|ZP_00717790.1\| COG2840: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75235537, gi\|... - gi\|75235537\|ref\|ZP_00719728.1\| COG2840: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|192932060, gi... - gi\|75259791\|ref\|ZP_00731093.1\| COG2840: Uncharacterized protein conserved in bacteria [Escherichia c... YFCN_SHIBS - UPF0115 protein YfcN OS=Shigella boydii serotype 4 (strain Sb227) GN=yfcN PE=3 SV=1 gi\|1799726, gi\|8... - gi\|89109151\|ref\|AP_002931.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|179...	2.0E-54	[1..183]	[1..183]
gi\|13362685, gi\|... - gi\|15832469\|ref\|NP_311242.1\| hypothetical protein ECs3214 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|188017223, gi... - gi\|188017223\|gb\|EDU55345.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4113], gi\|168748187\|... gi\|209764684, gi... - pir\|\|G91030 hypothetical protein ECs3214 [imported] - Escherichia coli (strain O157:H7, substrain R... YFCN_ECO5E - UPF0115 protein YfcN OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yfcN PE=3 SV=1 gi\|208818629, gi... - gi\|208818629\|ref\|ZP_03258949.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4042], gi\|208738... gi\|208811878, gi... - gi\|208811878\|ref\|ZP_03253207.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4045], gi\|208733... gi\|208725626, gi... - gi\|208805825\|ref\|ZP_03248162.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4206], gi\|208725... YFCN_ECO57 - UPF0115 protein YfcN OS=Escherichia coli O157:H7 GN=yfcN PE=3 SV=1 gi\|217326950, gi... - gi\|217326950\|ref\|ZP_03443033.1\| Smr domain protein [Escherichia coli O157:H7 str. TW14588], gi\|21731... gi\|254593624, gi... - gi\|254794224\|ref\|YP_003079061.1\| hypothetical protein ECSP_3206 [Escherichia coli O157:H7 str. TW143... gi\|168772936, gi... - gi\|187771017\|gb\|EDU34861.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4196], gi\|168772936\|... gi\|189363015, gi... - gi\|189363015\|gb\|EDU81434.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4486], gi\|168767964\|... gi\|168761224, gi... - gi\|189368226\|gb\|EDU86642.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4501], gi\|168761224\|... gi\|168755090, gi... - gi\|189357716\|gb\|EDU76135.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4401], gi\|168755090\|... gi\|195935711 - gi\|195935711\|ref\|ZP_03081093.1\| hypothetical protein EscherichcoliO157_04492 [Escherichia coli O157:... gi\|168798508, gi... - gi\|189378953\|gb\|EDU97369.1\| Smr domain protein [Escherichia coli O157:H7 str. EC508], gi\|168798508\|r... gi\|168787245, gi... - gi\|189372965\|gb\|EDU91381.1\| Smr domain protein [Escherichia coli O157:H7 str. EC869], gi\|168787245\|r... gi\|168780194, gi... - gi\|189001908\|gb\|EDU70894.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4076], gi\|168780194\|...	4.0E-54	[1..183]	[1..183]
YFCN_SHISS - UPF0115 protein YfcN OS=Shigella sonnei (strain Ss046) GN=yfcN PE=3 SV=1	4.0E-54	[1..183]	[1..183]
gi\|188494034, gi... - gi\|75515696\|ref\|ZP_00737831.1\| COG2840: Uncharacterized protein conserved in bacteria [Escherichia c...	1.0E-53	[1..183]	[1..183]
gi\|25355657 - gi\|25355657\|pir\|\|H85874 hypothetical protein Z3594 [imported] - Escherichia coli (strain O157:H7, s... gi\|15802878, gi\|... - gi\|15802878\|ref\|NP_288905.1\| hypothetical protein Z3594 [Escherichia coli O157:H7 EDL933], gi\|125166...	2.0E-53	[1..183]	[1..183]
gi\|91223591, gi\|... - gi\|91223591\|ref\|ZP_01258856.1\| hypothetical protein V12G01_23033 [Vibrio alginolyticus 12G01], gi\|91...	3.0E-50	[1..177]	[1..176]
Y1979_VIBVU - UPF0115 protein VV1_1979 OS=Vibrio vulnificus (strain CMCP6) GN=VV1_1979 PE=3 SV=1 Y1979_VIBVU, YJ7... - (Q8DB44) Hypothetical UPF0115 protein VV11979, UPF0115 protein VV1_1979 OS=Vibrio vulnificus GN=VV1_...	3.0E-50	[1..177]	[1..176]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKTSLSEE DQALFRQLMV GTRKIKQDTI VHRPLRKKIT EVPTRRLIQE QADASHYFSD  60
   61 EFQPLLNTEG PVKYVRE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [78-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVSHFELKKM RRGDYSPELF LDLHGLTQLQ AKQELGALIA ACRREHIFCA CVMHGHGKHI  60
   61 LKQQTPLWLA QHPHVMAFHQ APKEYGGDAA LLVLIEVEEW QPPELP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.69897
Match:	2d9iA
Description:	No description for 2d9iA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits