YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213160945
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E00-7866
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213160945.

Description	E-value	Query Range	Subject Range
gi\|253974241, gi... - gi\|254162340\|ref\|YP_003045448.1\| hypothetical protein ECB_02256 [Escherichia coli B str. REL606], gi... gi\|253978408, gi... - gi\|254289101\|ref\|YP_003054849.1\| hypothetical protein ECD_02256 [Escherichia coli BL21(DE3)], gi\|253... YFCN_ECOSM - UPF0115 protein YfcN OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=yfcN PE=3 SV=1 YFCN_ECOLU - UPF0115 protein YfcN OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=yfcN PE=3 SV=1 YFCN_ECOL5 - UPF0115 protein YfcN OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=yfcN PE=3 SV=1 gi\|75243142 - gi\|75243142\|ref\|ZP_00726848.1\| COG2840: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|194424990, gi... - gi\|83588355\|ref\|ZP_00926980.1\| COG2840: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|251785691, gi... - gi\|251785691\|ref\|YP_002999995.1\| hypothetical protein B21_02216 [Escherichia coli BL21], gi\|24237796...	2.0E-54	[1..183]	[1..183]
YFCN_SHIDS - UPF0115 protein YfcN OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=yfcN PE=3 SV=1	2.0E-54	[1..183]	[1..183]
YFCN_SALPK - UPF0115 protein YfcN OS=Salmonella paratyphi A (strain AKU_12601) GN=yfcN PE=3 SV=1 YFCN_SALPA - UPF0115 protein yfcN OS=Salmonella paratyphi A GN=yfcN PE=3 SV=1 YFCN_SALPA - UPF0115 protein YfcN OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=yfcN PE=3 SV=1	2.0E-54	[1..183]	[1..183]
gi\|194418856, gi... - gi\|83570058\|ref\|ZP_00921505.1\| COG2840: Uncharacterized protein conserved in bacteria [Shigella dyse... YFCN_SHIB3 - UPF0115 protein YfcN OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=yfcN PE=3 SV=1 YFCN_ECOUT - UPF0115 protein YfcN OS=Escherichia coli (strain UTI89 / UPEC) GN=yfcN PE=3 SV=1 YFCN_ECO24 - UPF0115 protein YfcN OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=yfcN PE=3 SV=1 gi\|47600716 - gi\|47600716\|emb\|CAE55837.1\| hypothetical protein YfcN [Escherichia coli Nissle 1917] YFCN_ECOHS - UPF0115 protein YfcN OS=Escherichia coli O9:H4 (strain HS) GN=yfcN PE=3 SV=1 YFCN_SHIF8 - UPF0115 protein YfcN OS=Shigella flexneri serotype 5b (strain 8401) GN=yfcN PE=3 SV=1 gi\|75209502, gi\|... - gi\|75209502\|ref\|ZP_00709727.1\| COG2840: Uncharacterized protein conserved in bacteria [Escherichia c... YFCN_ECOL6 - UPF0115 protein yfcN OS=Escherichia coli O6 GN=yfcN PE=3 SV=1 sp\|B7UFY9\|YFCN_ECO27 - UPF0115 protein yfcN OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yfcN PE=3 SV=1 YFCN_ECOL6 - UPF0115 protein YfcN OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yfcN PE=3 SV=... gi\|30042012, gi\|... - gi\|30063757\|ref\|NP_837928.1\| hypothetical protein S2541 [Shigella flexneri 2a str. 2457T], gi\|300420... YFCN_SHIFL - UPF0115 protein YfcN OS=Shigella flexneri GN=yfcN PE=3 SV=1 gi\|24052772, gi\|... - gi\|24113703\|ref\|NP_708213.1\| hypothetical protein SF2406 [Shigella flexneri 2a str. 301], gi\|2405277... YFCN_ECOLC - UPF0115 protein YfcN OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=yfcN PE=3 SV=1 gi\|124502015, gi... - gi\|124526544\|ref\|ZP_01698497.1\| Smr protein/MutS2 [Escherichia coli B], gi\|124502015\|gb\|EAY49476.1\| ... YFCN_ECO81 - UPF0115 protein YfcN OS=Escherichia coli O81 (strain ED1a) GN=yfcN PE=3 SV=1 EG14117 - putative DNA endonuclease / Predicted DNA endonuclease, function unknown YFCN_ECODH - UPF0115 protein YfcN OS=Escherichia coli (strain K12 / DH10B) GN=yfcN PE=3 SV=1 YFCN_ECO27 - UPF0115 protein YfcN OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yfcN PE=3 SV=1 YFCN_ECOSE - UPF0115 protein YfcN OS=Escherichia coli (strain SE11) GN=yfcN PE=3 SV=1 YFCN_ECO45 - UPF0115 protein YfcN OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=yfcN PE=3 SV=1 YFCN_ECO8A - UPF0115 protein YfcN OS=Escherichia coli O8 (strain IAI1) GN=yfcN PE=3 SV=1 EG14117 - putative DNA endonuclease / Predicted DNA endonuclease, function unknown gi\|227887391, gi... - gi\|227887391\|ref\|ZP_04005196.1\| Smr domain protein [Escherichia coli 83972], gi\|227835741\|gb\|EEJ4620... YFCN_ECOLI - UPF0115 protein yfcN - Escherichia coli gi\|226901176, gi... - gi\|237704810\|ref\|ZP_04535291.1\| yfcN [Escherichia sp. 3_2_53FAA], gi\|226901176\|gb\|EEH87435.1\| yfcN [... YFCN_ECOBW - UPF0115 protein YfcN OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=yfcN PE=3 SV=1 gi\|75231402, gi\|... - gi\|75231402\|ref\|ZP_00717790.1\| COG2840: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75235537, gi\|... - gi\|75235537\|ref\|ZP_00719728.1\| COG2840: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|192932060, gi... - gi\|75259791\|ref\|ZP_00731093.1\| COG2840: Uncharacterized protein conserved in bacteria [Escherichia c... YFCN_SHIBS - UPF0115 protein YfcN OS=Shigella boydii serotype 4 (strain Sb227) GN=yfcN PE=3 SV=1 gi\|1799726, gi\|8... - gi\|89109151\|ref\|AP_002931.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|179...	2.0E-54	[1..183]	[1..183]
gi\|13362685, gi\|... - gi\|15832469\|ref\|NP_311242.1\| hypothetical protein ECs3214 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|188017223, gi... - gi\|188017223\|gb\|EDU55345.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4113], gi\|168748187\|... gi\|209764684, gi... - pir\|\|G91030 hypothetical protein ECs3214 [imported] - Escherichia coli (strain O157:H7, substrain R... YFCN_ECO5E - UPF0115 protein YfcN OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yfcN PE=3 SV=1 gi\|208818629, gi... - gi\|208818629\|ref\|ZP_03258949.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4042], gi\|208738... gi\|208811878, gi... - gi\|208811878\|ref\|ZP_03253207.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4045], gi\|208733... gi\|208725626, gi... - gi\|208805825\|ref\|ZP_03248162.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4206], gi\|208725... YFCN_ECO57 - UPF0115 protein YfcN OS=Escherichia coli O157:H7 GN=yfcN PE=3 SV=1 gi\|217326950, gi... - gi\|217326950\|ref\|ZP_03443033.1\| Smr domain protein [Escherichia coli O157:H7 str. TW14588], gi\|21731... gi\|254593624, gi... - gi\|254794224\|ref\|YP_003079061.1\| hypothetical protein ECSP_3206 [Escherichia coli O157:H7 str. TW143... gi\|168772936, gi... - gi\|187771017\|gb\|EDU34861.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4196], gi\|168772936\|... gi\|189363015, gi... - gi\|189363015\|gb\|EDU81434.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4486], gi\|168767964\|... gi\|168761224, gi... - gi\|189368226\|gb\|EDU86642.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4501], gi\|168761224\|... gi\|168755090, gi... - gi\|189357716\|gb\|EDU76135.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4401], gi\|168755090\|... gi\|195935711 - gi\|195935711\|ref\|ZP_03081093.1\| hypothetical protein EscherichcoliO157_04492 [Escherichia coli O157:... gi\|168798508, gi... - gi\|189378953\|gb\|EDU97369.1\| Smr domain protein [Escherichia coli O157:H7 str. EC508], gi\|168798508\|r... gi\|168787245, gi... - gi\|189372965\|gb\|EDU91381.1\| Smr domain protein [Escherichia coli O157:H7 str. EC869], gi\|168787245\|r... gi\|168780194, gi... - gi\|189001908\|gb\|EDU70894.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4076], gi\|168780194\|...	4.0E-54	[1..183]	[1..183]
YFCN_SHISS - UPF0115 protein YfcN OS=Shigella sonnei (strain Ss046) GN=yfcN PE=3 SV=1	4.0E-54	[1..183]	[1..183]
gi\|188494034, gi... - gi\|75515696\|ref\|ZP_00737831.1\| COG2840: Uncharacterized protein conserved in bacteria [Escherichia c...	1.0E-53	[1..183]	[1..183]
gi\|25355657 - gi\|25355657\|pir\|\|H85874 hypothetical protein Z3594 [imported] - Escherichia coli (strain O157:H7, s... gi\|15802878, gi\|... - gi\|15802878\|ref\|NP_288905.1\| hypothetical protein Z3594 [Escherichia coli O157:H7 EDL933], gi\|125166...	2.0E-53	[1..183]	[1..183]
gi\|91223591, gi\|... - gi\|91223591\|ref\|ZP_01258856.1\| hypothetical protein V12G01_23033 [Vibrio alginolyticus 12G01], gi\|91...	3.0E-50	[1..177]	[1..176]
Y1979_VIBVU - UPF0115 protein VV1_1979 OS=Vibrio vulnificus (strain CMCP6) GN=VV1_1979 PE=3 SV=1 Y1979_VIBVU, YJ7... - (Q8DB44) Hypothetical UPF0115 protein VV11979, UPF0115 protein VV1_1979 OS=Vibrio vulnificus GN=VV1_...	3.0E-50	[1..177]	[1..176]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKTSLSEE DQALFRQLMV GTRKIKQDTI VHRPLRKKIT EVPTRRLIQE QADASHYFSD  60
   61 EFQPLLNTEG PVKYVRE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.330	a.46.1	Methionine synthase domain
View	Download	0.267	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.229	d.168.1	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
View	Download	0.204	d.26.1	FKBP-like
View	Download	0.202	a.4.2	Methylated DNA-protein cysteine methyltransferase, C-terminal domain

Predicted Domain #2

Region A:
Residues: [78-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVSHFELKKM RRGDYSPELF LDLHGLTQLQ AKQELGALIA ACRREHIFCA CVMHGHGKHI  60
   61 LKQQTPLWLA QHPHVMAFHQ APKEYGGDAA LLVLIEVEEW QPPELP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.69897
Match:	2d9iA
Description:	No description for 2d9iA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits