YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|224501470
Organism:	Listeria monocytogenes FSL R2-561
Length:	398 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|224501470.

Description	E-value	Query Range	Subject Range
ARGJ_LISMF - Arginine biosynthesis bifunctional protein ArgJ OS=Listeria monocytogenes serotype 4b (strain F2365)...	596.0	[0..1]	[398..1]
gi\|127765593, gi... - gi\|254912264\|ref\|ZP_05262276.1\| bifunctional ornithine acetyltransferase/N-acetylglutamate synthase ... gi\|255026884 - gi\|255026884\|ref\|ZP_05298870.1\| bifunctional ornithine acetyltransferase/N-acetylglutamate synthase ... gi\|126941387, gi... - gi\|254898243\|ref\|ZP_05258167.1\| bifunctional ornithine acetyltransferase/N-acetylglutamate synthase ... gi\|133733104, gi... - gi\|254936591\|ref\|ZP_05268288.1\| bifunctional ornithine acetyltransferase/N-acetylglutamate synthase ... gi\|47014836, gi\|... - gi\|47096803\|ref\|ZP_00234385.1\| glutamate N-acetyltransferase/amino-acid acetyltransferase [Listeria ...	595.0	[0..1]	[398..1]
ARGJ_LISIN - Arginine biosynthesis bifunctional protein ArgJ OS=Listeria innocua serovar 6a (strain CLIP 11262) G... ARGJ_LISIN - Arginine biosynthesis bifunctional protein ArgJ OS=Listeria innocua GN=argJ PE=3 SV=1	590.0	[0..1]	[398..1]
gi\|47093452, gi\|... - gi\|47093452\|ref\|ZP_00231216.1\| glutamate N-acetyltransferase/amino-acid acetyltransferase [Listeria ...	588.0	[0..1]	[398..1]
ARGJ_BACCZ - Arginine biosynthesis bifunctional protein ArgJ OS=Bacillus cereus (strain ZK / E33L) GN=argJ PE=3 S...	587.0	[0..2]	[398..10]
ARGJ_GEOKA - Arginine biosynthesis bifunctional protein ArgJ OS=Geobacillus kaustophilus GN=argJ PE=3 SV=1 ARGJ_GEOKA - Arginine biosynthesis bifunctional protein ArgJ OS=Geobacillus kaustophilus (strain HTA426) GN=argJ ...	584.0	[0..3]	[398..13]
ARGJ_OCEIH - Arginine biosynthesis bifunctional protein ArgJ OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM ... ARGJ_OCEIH - Arginine biosynthesis bifunctional protein argJ OS=Oceanobacillus iheyensis GN=argJ PE=3 SV=1	584.0	[0..3]	[398..12]
gi\|228811839, gi... - gi\|228947852\|ref\|ZP_04110139.1\| Arginine biosynthesis bifunctional protein argJ beta chain [Bacillus... gi\|65321523 - gi\|65321523\|ref\|ZP_00394482.1\| COG1364: N-acetylglutamate synthase (N-acetylornithine aminotransfera... gi\|49187037, gi\|... - gi\|49187037\|ref\|YP_030289.1\| bifunctional ornithine acetyltransferase/N-acetylglutamate synthase pro...	584.0	[0..2]	[398..10]
ARGJ_BACAN - Arginine biosynthesis bifunctional protein ArgJ OS=Bacillus anthracis GN=argJ PE=3 SV=1 gi\|21402186 - ref\|NP_658171.1\| ArgJ, ArgJ family [Bacillus anthracis str. A2012] gi\|218905271, gi... - gi\|218905271\|ref\|YP_002453105.1\| glutamate N-acetyltransferase/amino-acid acetyltransferase [Bacillu... gi\|190565859, gi... - gi\|190565859\|ref\|ZP_03018778.1\| glutamate N-acetyltransferase/amino-acid acetyltransferase [Bacillus... gi\|177652706, gi... - gi\|177652706\|ref\|ZP_02935122.1\| glutamate N-acetyltransferase/amino-acid acetyltransferase [Bacillus... gi\|47504798, gi\|... - gi\|47529650\|ref\|YP_020999.1\| bifunctional ornithine acetyltransferase/N-acetylglutamate synthase pro... gi\|227006718, gi... - gi\|227816910\|ref\|YP_002816919.1\| glutamate N-acetyltransferase/amino-acid acetyltransferase [Bacillu... gi\|30264209, gi\|... - gi\|30264209\|ref\|NP_846586.1\| bifunctional ornithine acetyltransferase/N-acetylglutamate synthase pro... gi\|254683898 - gi\|254683898\|ref\|ZP_05147758.1\| bifunctional ornithine acetyltransferase/N-acetylglutamate synthase ... gi\|229602352, gi... - gi\|229602352\|ref\|YP_002868432.1\| glutamate N-acetyltransferase/amino-acid acetyltransferase [Bacillu... gi\|254736245 - gi\|254736245\|ref\|ZP_05193951.1\| bifunctional ornithine acetyltransferase/N-acetylglutamate synthase ... gi\|254721733 - gi\|254721733\|ref\|ZP_05183522.1\| bifunctional ornithine acetyltransferase/N-acetylglutamate synthase ... gi\|254758224 - gi\|254758224\|ref\|ZP_05210251.1\| bifunctional ornithine acetyltransferase/N-acetylglutamate synthase ... gi\|170129182, gi... - gi\|170705642\|ref\|ZP_02896105.1\| glutamate N-acetyltransferase/amino-acid acetyltransferase [Bacillus... gi\|254754084 - gi\|254754084\|ref\|ZP_05206119.1\| bifunctional ornithine acetyltransferase/N-acetylglutamate synthase ... gi\|170668752, gi... - gi\|170687135\|ref\|ZP_02878353.1\| glutamate N-acetyltransferase/amino-acid acetyltransferase [Bacillus... gi\|167512548, gi... - gi\|167639489\|ref\|ZP_02397760.1\| glutamate N-acetyltransferase/amino-acid acetyltransferase [Bacillus... gi\|164713064, gi... - gi\|165871145\|ref\|ZP_02215795.1\| glutamate N-acetyltransferase/amino-acid acetyltransferase [Bacillus...	583.0	[0..2]	[398..9]
ARGJ_BACHK - Arginine biosynthesis bifunctional protein ArgJ OS=Bacillus thuringiensis subsp. konkukian (strain 9... ARGJ_BACHK - Arginine biosynthesis bifunctional protein ArgJ OS=Bacillus thuringiensis subsp. konkukian GN=argJ P...	583.0	[0..2]	[398..10]

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Predicted Domain #1

Region A:
Residues: [1-398]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELIKGNIAS PKGFYADGKH AGLKRKRNDI GWIYSEVPAN AAAVYTMNQM QAAPIFVTKD  60
   61 SFQSNAKLQA IIVNSGNANA CTGNQGMLDA LAMRAQTAEK LEIPLDSVAV ASTGIIGDML 120
  121 PMDKINAGIE MLEKQTGNAA DFEEAILTTD TFQKQISFQT EIGGRKVTMS GVAKGSGMIH 180
  181 PNMATMLAFI TTDAAIPAEL LQKLLKIKVD KTFNQITVDG DTSTNDMVVV MANGCAENPM 240
  241 LQEGTADFAK FADMFQAVTE HLAKSIARDG EGATKLIEVQ VNGATKTEDA RMIAKKIVSS 300
  301 SLVKTAAFGG DGNWGRIICA IGYSGGRFAP DNITIKIGGI EILNHSSQTI YNQQALDAYL 360
  361 EEEHIIIEVD LHIGLESGTA WGCDLSYEYV KINACYRT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	124.0
Match:	1vz6A
Description:	Ornithine Acetyltransferase (ORF6 Gene Product - Clavulanic Acid Biosynthesis) from Streptomyces clavuligerus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
glutamate N-acetyltransferase activity	7.31583566409397	bayes_pls_golite062009
acetyl-CoA:L-glutamate N-acetyltransferase activity	5.4926416554153	bayes_pls_golite062009
N-acetyltransferase activity	4.96696522207886	bayes_pls_golite062009
N-acyltransferase activity	4.73607169922009	bayes_pls_golite062009
transferase activity, transferring acyl groups	3.68873019774933	bayes_pls_golite062009
acetyltransferase activity	2.5583016526898	bayes_pls_golite062009
catalytic activity	1.79436687732784	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	1.59037053975861	bayes_pls_golite062009
acyltransferase activity	1.58751303684177	bayes_pls_golite062009
transferase activity	1.00050620701588	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: