YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213850185
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. M223
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213850185.

Description	E-value	Query Range	Subject Range
gi\|126208846, gi... - gi\|126208846\|ref\|YP_001054071.1\| hypothetical protein APL_1382 [Actinobacillus pleuropneumoniae L20]... gi\|32035442 - gi\|32035442\|ref\|ZP_00135408.1\| COG3171: Uncharacterized protein conserved in bacteria [Actinobacillu... gi\|190150702, gi... - gi\|190150702\|ref\|YP_001969227.1\| hypothetical protein APP7_1433 [Actinobacillus pleuropneumoniae ser...	181.0	[0..1]	[108..1]
gi\|77974452 - gi\|77974452\|ref\|ZP_00829992.1\| COG3171: Uncharacterized protein conserved in bacteria [Yersinia fred...	180.0	[0..1]	[108..1]
gi\|15603181, gi\|... - gi\|15603181\|ref\|NP_246254.1\| hypothetical protein PM1316 [Pasteurella multocida subsp. multocida str...	179.0	[0..1]	[108..1]
gi\|77976487 - gi\|77976487\|ref\|ZP_00831973.1\| COG3171: Uncharacterized protein conserved in bacteria [Yersinia inte...	179.0	[0..1]	[108..1]
Y341_HAEIN, YGGL... - (P44649) Protein HI0341, Uncharacterized protein HI_0341 OS=Haemophilus influenzae GN=HI_0341 PE=1 S... Y341_HAEIN - Uncharacterized protein HI_0341 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd...	179.0	[0..1]	[108..1]
gi\|77956387 - gi\|77956387\|ref\|ZP_00820490.1\| COG3171: Uncharacterized protein conserved in bacteria [Yersinia berc... gi\|77961508 - gi\|77961508\|ref\|ZP_00825344.1\| COG3171: Uncharacterized protein conserved in bacteria [Yersinia moll...	179.0	[0..1]	[108..1]
gi\|145209567, gi... - gi\|145597871\|ref\|YP_001161947.1\| hypothetical protein YPDSF_0564 [Yersinia pestis Pestoides F], gi\|1... gi\|186896656, gi... - gi\|186896656\|ref\|YP_001873768.1\| hypothetical protein YPTS_3356 [Yersinia pseudotuberculosis PB1/+],... gi\|170023071, gi... - gi\|170023071\|ref\|YP_001719576.1\| hypothetical protein YPK_0822 [Yersinia pseudotuberculosis YPIII], ... gi\|77633209, gi\|... - gi\|77633209\|ref\|ZP_00795353.1\| COG3171: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|153948134, gi... - gi\|77630198\|ref\|ZP_00792784.1\| COG3171: Uncharacterized protein conserved in bacteria [Yersinia pseu... gi\|89102073, gi\|... - gi\|89102073\|ref\|ZP_01174738.1\| COG3171: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|25356363 - pir\|\|AF0116 conserved hypothetical protein YPO0950 [imported] - Yersinia pestis (strain CO92) Q666M6\|Q666M6_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|45438098, gi\|... - gi\|45443230\|ref\|NP_994769.1\| hypothetical protein YP_3491 [Yersinia pestis biovar Microtus str. 9100... gi\|166010291, gi... - gi\|166010291\|ref\|ZP_02231189.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|21960281, gi\|... - gi\|22127213\|ref\|NP_670636.1\| hypothetical protein y3337 [Yersinia pestis KIM], gi\|21960281\|gb\|AAM868... gi\|165923189, gi... - gi\|165924989\|ref\|ZP_02220821.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|16121253, gi\|... - gi\|218928121\|ref\|YP_002345996.1\| hypothetical protein YPO0950 [Yersinia pestis CO92], gi\|16121253\|re... gi\|108806311, gi... - gi\|108806311\|ref\|YP_650227.1\| hypothetical protein YPA_0314 [Yersinia pestis Antiqua], gi\|108778224\|... gi\|167400124, gi... - gi\|167400124\|ref\|ZP_02305642.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|51597532, gi\|... - gi\|51597532\|ref\|YP_071723.1\| hypothetical protein YPTB3222 [Yersinia pseudotuberculosis IP 32953], g... gi\|108776956, gi... - gi\|229903771\|ref\|ZP_04518884.1\| hypothetical protein YP516_3575 [Yersinia pestis Nepal516], gi\|22967... gi\|166212795, gi... - gi\|166212795\|ref\|ZP_02238830.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167054319, gi... - gi\|167426716\|ref\|ZP_02318469.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|149290656, gi... - gi\|149367042\|ref\|ZP_01889075.1\| hypothetical protein YPE_2318 [Yersinia pestis CA88-4125], gi\|149290... gi\|167422034, gi... - gi\|167422034\|ref\|ZP_02313787.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|229704334, gi... - gi\|229837646\|ref\|ZP_04457808.1\| hypothetical protein YPS_1572 [Yersinia pestis Pestoides A], gi\|2297... gi\|229840870, gi... - gi\|229840870\|ref\|ZP_04461029.1\| hypothetical protein YPH_3221 [Yersinia pestis biovar Orientalis str... gi\|229690879, gi... - gi\|229842569\|ref\|ZP_04462724.1\| hypothetical protein YPF_0910 [Yersinia pestis biovar Orientalis str...	177.0	[0..1]	[108..1]
gi\|52424374, gi\|... - gi\|52424374\|ref\|YP_087511.1\| hypothetical protein MS0319 [Mannheimia succiniciproducens MBEL55E], gi...	177.0	[0..1]	[108..1]
gi\|198242884, gi... - gi\|198242884\|ref\|YP_002217083.1\| hypothetical protein SeD_A3451 [Salmonella enterica subsp. enterica... gi\|199604815, gi... - gi\|200387717\|ref\|ZP_03214329.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197249785, gi... - gi\|197249785\|ref\|YP_002148023.1\| hypothetical protein SeAg_B3272 [Salmonella enterica subsp. enteric... gi\|238909906 - gi\|238909906\|ref\|ZP_04653743.1\| hypothetical protein SentesTe_02060 [Salmonella enterica subsp. ente... gi\|197240189, gi... - gi\|197261934\|ref\|ZP_03162008.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|194444121, gi... - gi\|194444121\|ref\|YP_002042368.1\| hypothetical protein SNSL254_A3356 [Salmonella enterica subsp. ente... gi\|194409794, gi... - gi\|194451490\|ref\|YP_002047097.1\| hypothetical protein SeHA_C3348 [Salmonella enterica subsp. enteric... gi\|16766409, gi\|... - gi\|16766409\|ref\|NP_462024.1\| hypothetical protein STM3108 [Salmonella typhimurium LT2], gi\|16421661\|... gi\|168463705, gi... - gi\|195633654\|gb\|EDX52068.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205343491, gi... - gi\|205343491\|gb\|EDZ30255.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205338093, gi... - gi\|205338093\|gb\|EDZ24857.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205347063, gi... - gi\|205347063\|gb\|EDZ33694.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205323298, gi... - gi\|205323298\|gb\|EDZ11137.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205331243, gi... - gi\|205331243\|gb\|EDZ18007.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|161365437, gi... - gi\|161616073\|ref\|YP_001590038.1\| hypothetical protein SPAB_03874 [Salmonella enterica subsp. enteric... lcl\|NC_016856.1_... - [gene=yggL] [protein=hypothetical protein] [protein_id=YP_005239255.1] [location=complement(3286607.... gi\|62181619, gi\|... - gi\|62181619\|ref\|YP_218036.1\| hypothetical protein SC3049 [Salmonella enterica subsp. enterica serova... gi\|224584902, gi... - gi\|224584902\|ref\|YP_002638701.1\| hypothetical protein SPC_3174 [Salmonella enterica subsp. enterica ... gi\|205354030, gi... - gi\|205354030\|ref\|YP_002227831.1\| hypothetical protein SG3002 [Salmonella enterica subsp. enterica se... gi\|207858369, gi... - gi\|207858369\|ref\|YP_002245020.1\| hypothetical protein SEN2951 [Salmonella enterica subsp. enterica s...	177.0	[0..1]	[108..1]
gi\|113461797, gi... - gi\|113461797\|ref\|YP_719866.1\| hypothetical protein HS_1661 [Haemophilus somnus 129PT], gi\|112823840\|...	177.0	[0..1]	[108..1]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKNRSRRLR KKMHIDEFQE LGFSVAWRFP EGTSEEQIDK TVDDFINDVI EPNKLAFDGS  60
   61 GYLAWEGLIC MQEIGKCTEE HQAIVRKWLE ARNLEEVRTS ELFDVWWD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	83.823909
Match:	PF04320.5
Description:	No description for PF04320.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits