YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|168489841, gi...
Organism:	Streptococcus pneumoniae SP195
Length:	264 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|168489841, gi....

Description	E-value	Query Range	Subject Range
gi\|50590267, gi\|... - gi\|81177085\|ref\|ZP_00875979.1\| Glutamate racemase [Streptococcus suis 89/1591], gi\|80976216\|gb\|EAP39...	301.0	[0..1]	[264..1]
gi\|77174157, gi\|... - gi\|77407235\|ref\|ZP_00784198.1\| glutamate racemase [Streptococcus agalactiae H36B], gi\|77174157\|gb\|EA... MURI_STRA3 - Glutamate racemase OS=Streptococcus agalactiae serotype III (strain NEM316) GN=murI PE=3 SV=1 gi\|77414377, gi\|... - gi\|77414377\|ref\|ZP_00790532.1\| glutamate racemase [Streptococcus agalactiae 515], gi\|77159567\|gb\|EAO... MURI_STRA3 - Glutamate racemase OS=Streptococcus agalactiae serotype III GN=murI PE=3 SV=1	298.0	[0..1]	[264..1]
gi\|77408489, gi\|... - gi\|77408489\|ref\|ZP_00785227.1\| glutamate racemase [Streptococcus agalactiae COH1], gi\|77172931\|gb\|EA... gi\|76585615, gi\|... - gi\|76799029\|ref\|ZP_00781224.1\| glutamate racemase [Streptococcus agalactiae 18RS21], gi\|76585615\|gb\|... MURI_STRA5 - Glutamate racemase OS=Streptococcus agalactiae serotype V (strain ATCC BAA-611 / 2603 V/R) GN=murI P... MURI_STRA1 - Glutamate racemase OS=Streptococcus agalactiae serotype Ia (strain ATCC 27591 / A909 / CDC SS700) GN... MURI_STRA1 - Glutamate racemase OS=Streptococcus agalactiae serotype Ia GN=murI PE=3 SV=1 MURI_STRA5 - Glutamate racemase OS=Streptococcus agalactiae serotype V GN=murI PE=3 SV=1	297.0	[0..1]	[264..1]
MURI_STRPM - Glutamate racemase OS=Streptococcus pyogenes serotype M28 (strain MGAS6180) GN=murI PE=3 SV=1 MURI_STRPM - Glutamate racemase OS=Streptococcus pyogenes serotype M28 GN=murI PE=3 SV=1	296.0	[0..1]	[264..1]
MURI_STRPQ - Glutamate racemase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=murI PE=3 SV=1 MURI_STRP3 - Glutamate racemase OS=Streptococcus pyogenes serotype M3 GN=murI PE=3 SV=1 MURI_STRP3 - Glutamate racemase OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=murI PE=...	296.0	[0..1]	[264..1]
gi\|56808577 - gi\|56808577\|ref\|ZP_00366308.1\| COG0796: Glutamate racemase [Streptococcus pyogenes M49 591] MURI_STRPZ - Glutamate racemase OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=murI PE=3 SV=1 MURI_STRPC - Glutamate racemase OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=murI PE=3 SV=1 MURI_STRPB - Glutamate racemase OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=murI PE=3 SV=1	295.0	[0..1]	[264..1]
MURI_STRP8 - Glutamate racemase OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=murI PE=3 SV=1 MURI_STRP8 - Glutamate racemase OS=Streptococcus pyogenes serotype M18 GN=murI PE=3 SV=1 MURI_STRPG - Glutamate racemase OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=murI PE=3 SV=1	295.0	[0..1]	[264..1]
MURI_STRP6 - Glutamate racemase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=murI P... MURI_STRP6 - Glutamate racemase OS=Streptococcus pyogenes serotype M6 GN=murI PE=3 SV=1	295.0	[0..1]	[264..1]
gi\|71910117, gi\|... - gi\|71910117\|ref\|YP_281667.1\| glutamate racemase [Streptococcus pyogenes MGAS5005], gi\|71852899\|gb\|AA... gi\|15674511, gi\|... - gi\|15674511\|ref\|NP_268685.1\| glutamate racemase [Streptococcus pyogenes M1 GAS], gi\|13621614\|gb\|AAK3... MURI_STRPY - (Q9A1B7) Glutamate racemase (EC 5.1.1.3) MURI_STRP1 - Glutamate racemase OS=Streptococcus pyogenes serotype M1 GN=murI PE=1 SV=1	294.0	[0..1]	[264..1]
gi\|55738227 - gb\|AAV61868.1\| glutamate racemase [Streptococcus thermophilus CNRZ1066] MURI_STRTD - Glutamate racemase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=murI PE=3 SV=1 MURI_STRT1 - Glutamate racemase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=murI PE=3 SV=1	293.0	[0..1]	[264..1]

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Predicted Domain #1

Region A:
Residues: [1-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNRPIGFLD SGVGGLTVVR ELMRQLPHEE IVYIGDSARA PYGPRPAEQI REYTWQLVNF  60
   61 LLTKDVKMIV IACNTATAVV WEEIKAQLDI PVLGVILPGA SAAIKSSQGG KIGVIGTPMT 120
  121 VQSDIYRQKI HDLDPDLQVE SLACPKFAPL VESGALSTSV TKKVVYETLR PLVGKVDSLI 180
  181 LGCTHYPLLR PIIQNVMGPK VQLIDSGAEC VRDISVLLNY FEINRGRDAG PLHHRFYTTA 240
  241 SSQSFAQIGE EWLEKEIHVE HVEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	79.69897
Match:	2ohoA
Description:	No description for 2ohoA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits