YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213852760
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. M223
Length:	652 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213852760.

Description	E-value	Query Range	Subject Range
ACSA_SALTY - Acetyl-coenzyme A synthetase OS=Salmonella typhimurium GN=acs PE=1 SV=1 ACSA_SALTY - Acetyl-coenzyme A synthetase OS=Salmonella typhimurium GN=acs PE=1 SV=1 lcl\|NC_016856.1_... - [gene=acs] [protein=acetyl-CoA synthetase] [protein_id=YP_005240576.1] [location=complement(4527256.... gi\|197244220, gi... - gi\|197265965\|ref\|ZP_03166039.1\| acetate--CoA ligase [Salmonella enterica subsp. enterica serovar Sai... ACSA_SALTY - Acetyl-coenzyme A synthetase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=acs ... gi\|205330151, gi... - gi\|205330151\|gb\|EDZ16915.1\| acetate--CoA ligase [Salmonella enterica subsp. enterica serovar 4,[5],1...	0.0	[1..652]	[1..652]
gi\|31616029, gi\|... - gi\|31616030\|pdb\|1PG4\|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica, gi\|31616029\|pdb\|1PG4\|A C...	0.0	[1..652]	[1..652]
gi\|56416073, gi\|... - gi\|56416073\|ref\|YP_153148.1\| acetyl-CoA synthetase [Salmonella enterica subsp. enterica serovar Para... gi\|197365000, gi... - gi\|197365000\|ref\|YP_002144637.1\| acetyl-CoA synthetase [Salmonella enterica subsp. enterica serovar ...	0.0	[1..652]	[1..652]
gi\|62182724, gi\|... - gi\|62182724\|ref\|YP_219141.1\| acetyl-CoA synthetase [Salmonella enterica subsp. enterica serovar Chol...	0.0	[1..652]	[1..652]
gi\|75514828, gi\|... - gi\|75514828\|ref\|ZP_00737057.1\| COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Escher... gi\|157163539, gi... - gi\|75197927\|ref\|ZP_00707997.1\| COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Escher...	0.0	[1..652]	[1..652]
gi\|73858039, gi\|... - gi\|74314562\|ref\|YP_312981.1\| acetyl-CoA synthetase [Shigella sonnei Ss046], gi\|73858039\|gb\|AAZ90746....	0.0	[1..652]	[1..652]
gi\|254164004, gi... - gi\|254164004\|ref\|YP_003047112.1\| acetyl-coenzyme A synthetase [Escherichia coli B str. REL606], gi\|2... gi\|83587193, gi\|... - gi\|83587193\|ref\|ZP_00925822.1\| COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Escher... gi\|157159006, gi... - gi\|75188792\|ref\|ZP_00702059.1\| COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Escher... gi\|194426861, gi... - gi\|75211996\|ref\|ZP_00712051.1\| COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Escher... gi\|75238604, gi\|... - gi\|75238604\|ref\|ZP_00722593.1\| COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Escher... gi\|75258987, gi\|... - gi\|75258987\|ref\|ZP_00730355.1\| COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Escher... EG11448 - acetyl-CoA synthetase / Acetyl CoA synthase, acetate-scavenging enzyme, improves carbon starvation s... gi\|85676821, gi\|... - gi\|89110790\|ref\|AP_004570.1\| bifunctional acetyl-CoA synthetase and propionyl-CoA synthetase [Escher... EG11448 - acetyl-CoA synthetase / Acetyl CoA synthase, acetate-scavenging enzyme, improves carbon starvation s... ACSA_ECOLI - Acetyl-coenzyme A synthetase (EC 6.2.1.1) (Acetate--CoA ligase) (Acyl-activating enzyme) - Escherich... gi\|218697778, gi... - gi\|218697778\|ref\|YP_002405445.1\| acetyl-CoA synthetase [Escherichia coli 55989], gi\|218354510\|emb\|CA... gi\|218556627, gi... - gi\|218556627\|ref\|YP_002389541.1\| acetyl-CoA synthetase [Escherichia coli IAI1], gi\|218363396\|emb\|CAR... gi\|169756860, gi... - gi\|170021932\|ref\|YP_001726886.1\| acetyl-CoA synthetase [Escherichia coli ATCC 8739], gi\|169756860\|gb... gi\|238903178, gi... - gi\|238903178\|ref\|YP_002928974.1\| acetyl-CoA synthetase [Escherichia coli BW2952], gi\|238859913\|gb\|AC... gi\|251787323, gi... - gi\|251787323\|ref\|YP_003001627.1\| hypothetical protein B21_03901 [Escherichia coli BL21], gi\|24237959... gi\|124527708, gi... - gi\|124527708\|ref\|ZP_01699143.1\| acetate--CoA ligase [Escherichia coli B], gi\|124501151\|gb\|EAY48617.1... gi\|209921555, gi... - gi\|209921555\|ref\|YP_002295639.1\| acetyl-CoA synthetase [Escherichia coli SE11], gi\|209914814\|dbj\|BAG... gi\|254290754, gi... - gi\|254290754\|ref\|YP_003056502.1\| acetyl-coenzyme A synthetase [Escherichia coli BL21(DE3)], gi\|25398... gi\|170083524, gi... - gi\|170083524\|ref\|YP_001732844.1\| acetyl-CoA synthetase [Escherichia coli str. K-12 substr. DH10B], g... gi\|226840180, gi... - gi\|254037074\|ref\|ZP_04871151.1\| acetyl-coenzyme A synthetase [Escherichia sp. 1_1_43], gi\|226840180\|...	0.0	[1..652]	[1..652]
gi\|226901561, gi... - gi\|237703649\|ref\|ZP_04534130.1\| acetyl-CoA synthetase [Escherichia sp. 3_2_53FAA], gi\|226901561\|gb\|E... gi\|91075186, gi\|... - gi\|91213612\|ref\|YP_543598.1\| acetyl-CoA synthetase [Escherichia coli UTI89], gi\|91075186\|gb\|ABE10067... gi\|117626351, gi... - gi\|117626351\|ref\|YP_859674.1\| acetyl-CoA synthetase [Escherichia coli APEC O1], gi\|115515475\|gb\|ABJ0... gi\|218561154, gi... - gi\|218561154\|ref\|YP_002394067.1\| acetyl-CoA synthetase [Escherichia coli S88], gi\|218367923\|emb\|CAR0...	0.0	[1..652]	[1..652]
gi\|75241111, gi\|... - gi\|75241111\|ref\|ZP_00724985.1\| COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Escher... ACSA_ECOL6 - Acetyl-coenzyme A synthetase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=acs P... gi\|227836044, gi... - gi\|227886903\|ref\|ZP_04004708.1\| acetyl-CoA synthetase [Escherichia coli 83972], gi\|227836044\|gb\|EEJ4... gi\|110644420, gi... - gi\|110644420\|ref\|YP_672150.1\| acetyl-CoA synthetase [Escherichia coli 536], gi\|110346012\|gb\|ABG72249... gi\|218692361, gi... - gi\|218692361\|ref\|YP_002400573.1\| acetyl-CoA synthetase [Escherichia coli ED1a], gi\|218429925\|emb\|CAR... ACSA_ECOL6 - Acetyl-coenzyme A synthetase OS=Escherichia coli O6 GN=acs PE=3 SV=1	0.0	[1..652]	[1..652]
gi\|110617460, gi... - gi\|110807912\|ref\|YP_691432.1\| acetyl-CoA synthetase [Shigella flexneri 5 str. 8401], gi\|110617460\|gb...	0.0	[1..652]	[1..652]

Back

Predicted Domain #1

Region A:
Residues: [1-652]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQTHKHAIP ANIADRCLIN PEQYETKYKQ SINDPDTFWG EQGKILDWIT PYQKVKNTSF  60
   61 APGNVSIKWY EDGTLNLAAN CLDRHLQENG DRTAIIWEGD DASQSKHISY RELHRDVCRF 120
  121 ANTLLDLGIK KGDVVAIYMP MVPEAAVAML ACARIGAVHS VIFGGFSPEA IAGRIIDSSS 180
  181 RLVITADEGV RAGRSIPLKK NVDDALKNPN VTSVEHVIVL KRTGNDIDWQ EGRDLWWRDL 240
  241 IEKASPEHQP EAMNAEDPLF ILYTSGSTGK PKGVLHTTGG YLVYAATTFK YVFDYHPGDI 300
  301 YWCTADVGWV TGHSYLLYGP LACGATTLMF EGVPNWPTPA RMCQVVDKHQ VNILYTAPTA 360
  361 IRALMAEGDK AIEGTDRSSL RILGSVGEPI NPEAWEWYWK KIGKEKCPVV DTWWQTETGG 420
  421 FMITPLPGAI ELKAGSATRP FFGVQPALVD NEGHPQEGAT EGNLVITDSW PGQARTLFGD 480
  481 HERFEQTYFS TFKNMYFSGD GARRDEDGYY WITGRVDDVL NVSGHRLGTA EIESALVAHP 540
  541 KIAEAAVVGI PHAIKGQAIY AYVTLNHGEE PSPELYAEVR NWVRKEIGPL ATPDVLHWTD 600
  601 SLPKTRSGKI MRRILRKIAA GDTSNLGDTS TLADPGVVEK LLEEKQAIAM PS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2p2bA
Description:	No description for 2p2bA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits