YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|214002351
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-3139
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|214002351.

Description	E-value	Query Range	Subject Range
gi\|1588994 - gi\|1588994\|prf\|\|2209422B flgM gene	5.0E-20	[1..96]	[1..98]
lcl\|NC_016856.1_... - [gene=flgM] [protein=anti-sigma-28 factor FlgM] [protein_id=YP_005236926.1] [location=complement(121... gi\|62127322, gi\|... - gi\|62179689\|ref\|YP_216106.1\| anti-sigma28 factor FlgM [Salmonella enterica subsp. enterica serovar C... gi\|56128098, gi\|... - gi\|56413841\|ref\|YP_150916.1\| anti-sigma28 factor FlgM [Salmonella enterica subsp. enterica serovar P... gi\|238911008 - gi\|238911008\|ref\|ZP_04654845.1\| anti-sigma28 factor FlgM [Salmonella enterica subsp. enterica serova... gi\|18026883\|gb\|A... - flagellar protein FlgM [Salmonella choleraesuis] FLGM_SALTY - Negative regulator of flagellin synthesis OS=Salmonella typhimurium GN=flgM PE=1 SV=1 gi\|205322450, gi... - gi\|205322450\|gb\|EDZ10289.1\| negative regulator of flagellin synthesis [Salmonella enterica subsp. en... gi\|161614607, gi... - gi\|161614607\|ref\|YP_001588572.1\| anti-sigma28 factor FlgM [Salmonella enterica subsp. enterica serov... gi\|205331918, gi... - gi\|205331918\|gb\|EDZ18682.1\| negative regulator of flagellin synthesis [Salmonella enterica subsp. en... gi\|205328029, gi... - gi\|205328029\|gb\|EDZ14793.1\| negative regulator of flagellin synthesis [Salmonella enterica subsp. en... FLGM_SALTY - Negative regulator of flagellin synthesis OS=Salmonella typhimurium GN=flgM PE=1 SV=1 gi\|200390231, gi... - gi\|200390231\|ref\|ZP_03216842.1\| negative regulator of flagellin synthesis [Salmonella enterica subsp... gi\|198244659, gi... - gi\|198244659\|ref\|YP_002215965.1\| negative regulator of flagellin synthesis [Salmonella enterica subs... gi\|205353090, gi... - gi\|205353090\|ref\|YP_002226891.1\| anti-sigma28 factor FlgM [Salmonella enterica subsp. enterica serov... gi\|18026883 - gi\|18026883\|gb\|AAL55669.1\| flagellar protein FlgM [Salmonella choleraesuis] gi\|204930843, gi... - gi\|204930843\|ref\|ZP_03221716.1\| negative regulator of flagellin synthesis [Salmonella enterica subsp... FLGM_SALTY - Negative regulator of flagellin synthesis OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 70... gi\|197250827, gi... - gi\|197250827\|ref\|YP_002146871.1\| negative regulator of flagellin synthesis [Salmonella enterica subs... gi\|194734476, gi... - gi\|194734476\|ref\|YP_002114171.1\| negative regulator of flagellin synthesis [Salmonella enterica subs... gi\|197094241, gi... - gi\|197362764\|ref\|YP_002142401.1\| anti-sigma28 factor FlgM [Salmonella enterica subsp. enterica serov... gi\|197265763, gi... - gi\|197265763\|ref\|ZP_03165837.1\| negative regulator of flagellin synthesis [Salmonella enterica subsp... gi\|194444668, gi... - gi\|194444668\|ref\|YP_002040426.1\| negative regulator of flagellin synthesis [Salmonella enterica subs... gi\|205341005, gi... - gi\|205341005\|gb\|EDZ27769.1\| negative regulator of flagellin synthesis [Salmonella enterica subsp. en... gi\|194456320, gi... - gi\|194469956\|ref\|ZP_03075940.1\| negative regulator of flagellin synthesis [Salmonella enterica subsp... gi\|194449065, gi... - gi\|194449065\|ref\|YP_002045171.1\| anti-sigma28 factor FlgM [Salmonella enterica subsp. enterica serov... gi\|205336441, gi... - gi\|205336441\|gb\|EDZ23205.1\| negative regulator of flagellin synthesis [Salmonella enterica subsp. en... gi\|168237252, gi... - gi\|197289850\|gb\|EDY29211.1\| negative regulator of flagellin synthesis (Anti-sigma-28 factor) [Salmon... gi\|195630464, gi... - gi\|195630464\|gb\|EDX49090.1\| negative regulator of flagellin synthesis [Salmonella enterica subsp. en... gi\|205347410, gi... - gi\|205347410\|gb\|EDZ34041.1\| negative regulator of flagellin synthesis [Salmonella enterica subsp. en... gi\|224584324, gi... - gi\|224584324\|ref\|YP_002638122.1\| negative regulator of flagellin synthesis (anti-sigma factor) [Salm... gi\|206709123, gi... - gi\|207857320\|ref\|YP_002243971.1\| anti-sigma28 factor FlgM [Salmonella enterica subsp. enterica serov...	1.0E-19	[1..97]	[1..97]
gi\|238788310, gi... - gi\|77975731\|ref\|ZP_00831265.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact...	5.0E-19	[1..96]	[1..98]
gi\|193069472, gi... - gi\|75235925\|ref\|ZP_00720062.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact...	6.0E-19	[1..96]	[1..96]
gi\|75240667, gi\|... - gi\|75240667\|ref\|ZP_00724584.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact... gi\|110342839, gi... - gi\|110641247\|ref\|YP_668977.1\| anti-sigma28 factor FlgM [Escherichia coli 536], gi\|110342839\|gb\|ABG69...	3.0E-18	[1..96]	[1..96]
gi\|26247211, gi\|... - gi\|26247211\|ref\|NP_753251.1\| anti-sigma28 factor FlgM [Escherichia coli CFT073], gi\|26107612\|gb\|AAN7... gi\|209773430, gi... - pir\|\|E85669 hypothetical protein flgM [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15801188, gi\|... - gi\|15801188\|ref\|NP_287205.1\| anti-sigma28 factor FlgM [Escherichia coli O157:H7 EDL933], gi\|12514609... gi\|15830703, gi\|... - gi\|15830703\|ref\|NP_309476.1\| FlgM [Escherichia coli O157:H7], gi\|13360913\|dbj\|BAB34872.1\| flagellin ... gi\|217328149, gi... - gi\|217328149\|ref\|ZP_03444231.1\| negative regulator of flagellin synthesis FlgM [Escherichia coli O15... gi\|218364722, gi... - gi\|218557953\|ref\|YP_002390866.1\| anti-sigma28 factor FlgM [Escherichia coli S88], gi\|218364722\|emb\|C... gi\|218689024, gi... - gi\|218689024\|ref\|YP_002397236.1\| anti-sigma28 factor FlgM [Escherichia coli ED1a], gi\|218426588\|emb\|... gi\|218431576, gi... - gi\|218704479\|ref\|YP_002411998.1\| anti-sigma28 factor FlgM [Escherichia coli UMN026], gi\|218431576\|em... gi\|208732554, gi... - gi\|208815906\|ref\|ZP_03257085.1\| negative regulator of flagellin synthesis FlgM [Escherichia coli O15... gi\|208822617, gi... - gi\|208822617\|ref\|ZP_03262936.1\| negative regulator of flagellin synthesis FlgM [Escherichia coli O15... gi\|209399485, gi... - gi\|209399485\|ref\|YP_002269917.1\| negative regulator of flagellin synthesis FlgM [Escherichia coli O1... gi\|215486280, gi... - gi\|215486280\|ref\|YP_002328711.1\| anti-sigma28 factor FlgM [Escherichia coli O127:H6 str. E2348/69], ... gi\|227886571, gi... - gi\|227886571\|ref\|ZP_04004376.1\| anti-sigma28 factor FlgM [Escherichia coli 83972], gi\|227836775\|gb\|E... gi\|237706943, gi... - gi\|237706943\|ref\|ZP_04537424.1\| flagellar protein FlgM [Escherichia sp. 3_2_53FAA], gi\|226898153\|gb\|... gi\|254591853, gi... - gi\|254792453\|ref\|YP_003077290.1\| anti-sigma factor for FliA (sigma 28) [Escherichia coli O157:H7 str... gi\|81241463, gi\|... - gi\|82777315\|ref\|YP_403664.1\| anti-sigma28 factor FlgM [Shigella dysenteriae Sd197], gi\|81241463\|gb\|A... gi\|91071797, gi\|... - gi\|91210223\|ref\|YP_540209.1\| anti-sigma28 factor FlgM [Escherichia coli UTI89], gi\|91071797\|gb\|ABE06... gi\|15830703, gi\|... - gi\|15830703\|ref\|NP_309476.1\| anti-sigma28 factor FlgM [Escherichia coli O157:H7 str. Sakai], gi\|1336... gi\|168790006, gi... - gi\|189370512\|gb\|EDU88928.1\| negative regulator of flagellin synthesis FlgM [Escherichia coli O157:H7... gi\|189375935, gi... - gi\|189375935\|gb\|EDU94351.1\| negative regulator of flagellin synthesis FlgM [Escherichia coli O157:H7... gi\|195935461 - gi\|195935461\|ref\|ZP_03080843.1\| anti-sigma28 factor FlgM [Escherichia coli O157:H7 str. EC4024] gi\|208725610, gi... - gi\|208805809\|ref\|ZP_03248146.1\| negative regulator of flagellin synthesis FlgM [Escherichia coli O15... gi\|189365509, gi... - gi\|189365509\|gb\|EDU83925.1\| negative regulator of flagellin synthesis FlgM [Escherichia coli O157:H7... gi\|168767730, gi... - gi\|189363061\|gb\|EDU81480.1\| negative regulator of flagellin synthesis FlgM [Escherichia coli O157:H7... gi\|168773916, gi... - gi\|187770459\|gb\|EDU34303.1\| negative regulator of flagellin synthesis FlgM [Escherichia coli O157:H7... gi\|188999080, gi... - gi\|188999080\|gb\|EDU68066.1\| negative regulator of flagellin synthesis FlgM [Escherichia coli O157:H7... gi\|115512381, gi... - gi\|117623257\|ref\|YP_852170.1\| anti-sigma28 factor FlgM [Escherichia coli APEC O1], gi\|115512381\|gb\|A... gi\|168747153, gi... - gi\|188017976\|gb\|EDU56098.1\| negative regulator of flagellin synthesis FlgM [Escherichia coli O157:H7... gi\|168758637, gi... - gi\|189354563\|gb\|EDU72982.1\| negative regulator of flagellin synthesis FlgM [Escherichia coli O157:H7...	3.0E-18	[1..96]	[1..96]
gi\|77979941, gi\|... - gi\|77979941\|ref\|ZP_00835357.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact...	4.0E-18	[1..96]	[1..98]
gi\|145598615, gi... - gi\|145598615\|ref\|YP_001162691.1\| anti-sigma28 factor FlgM [Yersinia pestis Pestoides F], gi\|14521031... gi\|229896237, gi... - gi\|229896237\|ref\|ZP_04511407.1\| negative regulator of flagellin synthesis [Yersinia pestis Pestoides... gi\|229897172, gi... - gi\|229897172\|ref\|ZP_04512328.1\| negative regulator of flagellin synthesis [Yersinia pestis biovar Or... gi\|229897898, gi... - gi\|229897898\|ref\|ZP_04513049.1\| negative regulator of flagellin synthesis [Yersinia pestis biovar Or... gi\|149366256, gi... - gi\|149366256\|ref\|ZP_01888291.1\| negative regulator of flagellin synthesis [Yersinia pestis CA88-4125... gi\|166010830, gi... - gi\|166010830\|ref\|ZP_02231728.1\| negative regulator of flagellin synthesis [Yersinia pestis biovar An... gi\|166208206, gi... - gi\|166211026\|ref\|ZP_02237061.1\| negative regulator of flagellin synthesis [Yersinia pestis biovar An... gi\|167401131, gi... - gi\|167401131\|ref\|ZP_02306634.1\| negative regulator of flagellin synthesis [Yersinia pestis biovar An... gi\|162418869, gi... - gi\|77636013\|ref\|ZP_00798091.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact... gi\|167420327, gi... - gi\|167420327\|ref\|ZP_02312080.1\| negative regulator of flagellin synthesis [Yersinia pestis biovar Or... gi\|77628869, gi\|... - gi\|77628869\|ref\|ZP_00791455.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact... gi\|167055151, gi... - gi\|167425752\|ref\|ZP_02317505.1\| negative regulator of flagellin synthesis [Yersinia pestis biovar Me... gi\|167469714 - gi\|167469714\|ref\|ZP_02334418.1\| negative regulator of flagellin synthesis [Yersinia pestis FV-1] gi\|170024652, gi... - gi\|170024652\|ref\|YP_001721157.1\| anti-sigma28 factor FlgM [Yersinia pseudotuberculosis YPIII], gi\|16... gi\|186895109, gi... - gi\|186895109\|ref\|YP_001872221.1\| anti-sigma28 factor FlgM [Yersinia pseudotuberculosis PB1/+], gi\|18... gi\|89105477, gi\|... - gi\|89105477\|ref\|ZP_01177996.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact... gi\|108807168, gi... - gi\|108807168\|ref\|YP_651084.1\| anti-sigma28 factor FlgM [Yersinia pestis Antiqua], gi\|108779081\|gb\|AB... gi\|229902870, gi... - gi\|229902870\|ref\|ZP_04517987.1\| negative regulator of flagellin synthesis [Yersinia pestis Nepal516]... gi\|165925987, gi... - gi\|165925987\|ref\|ZP_02221819.1\| negative regulator of flagellin synthesis [Yersinia pestis biovar Or... gi\|25510407 - pir\|\|AB0219 negative regulator of flagellin synthesis flgM [imported] - Yersinia pestis (strain CO92... gi\|45436275, gi\|... - gi\|45441414\|ref\|NP_992953.1\| anti-sigma28 factor FlgM [Yersinia pestis biovar Microtus str. 91001], ... gi\|21959383, gi\|... - gi\|22126396\|ref\|NP_669819.1\| anti-sigma28 factor FlgM [Yersinia pestis KIM], gi\|21959383\|gb\|AAM86070... gi\|218928917, gi... - gi\|218928917\|ref\|YP_002346792.1\| anti-sigma28 factor FlgM [Yersinia pestis CO92], gi\|16122049\|ref\|NP... gi\|51589288, gi\|... - gi\|51596006\|ref\|YP_070197.1\| anti-sigma28 factor FlgM [Yersinia pseudotuberculosis IP 32953], gi\|515... Q66BU7\|Q66BU7_YERPS - Negative regulator of flagellin synthesis - Yersinia pseudotuberculosis	8.0E-18	[2..96]	[3..99]

Back

Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIDRTSPLK PVSTVQTRET SDTPVQKTRQ EKTSAATSAS VTLSDAQAKL MQPGVSDINM  60
   61 ERVEALKTAI RNGELKMDTG KIADSLIREA QSYLQNK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.56
Match:	1rp3B
Description:	Cocrystal structure of the flagellar sigma/anti-sigma complex, Sigma-28/FlgM
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits