YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|197362208, gi...
Organism:	Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601
Length:	84 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|197362208, gi....

Description	E-value	Query Range	Subject Range
gi\|78390589, gi\|... - gi\|78492161\|ref\|ZP_00844398.1\| Transglycosylase-associated protein [Rhodopseudomonas palustris BisB1...	4.0E-15	[1..83]	[46..126]
gi\|76809430, gi\|... - gi\|76809430\|ref\|YP_334412.1\| hypothetical protein BURPS1710b_3035 [Burkholderia pseudomallei 1710b],...	1.0E-14	[2..83]	[244..322]
gi\|111280999, gi... - gi\|111618532\|ref\|ZP_01405554.1\| membrane protein-like [Acidovorax avenae subsp. citrulli AAC00-1], g...	6.0E-14	[17..82]	[119..181]
gi\|67544650, gi\|... - gi\|67544650\|ref\|ZP_00422577.1\| Transglycosylase-associated protein [Burkholderia vietnamiensis G4], ...	7.0E-14	[3..83]	[45..122]
gi\|110805195, gi... - gi\|110805195\|ref\|YP_688715.1\| hypothetical protein SFV_1203 [Shigella flexneri 5 str. 8401], gi\|1106...	5.0E-13	[1..83]	[12..94]
gi\|91210409, gi\|... - gi\|91210409\|ref\|YP_540395.1\| transglycosylase associated protein [Escherichia coli UTI89], gi\|910719... gi\|226899908, gi... - gi\|237705151\|ref\|ZP_04535632.1\| transglycosylase associated protein [Escherichia sp. 3_2_53FAA], gi\|... gi\|26247510, gi\|... - gi\|26247510\|ref\|NP_753550.1\| transglycosylase associated protein [Escherichia coli CFT073], gi\|26107...	1.0E-12	[1..83]	[12..94]
gi\|24051487, gi\|... - ref\|NP_707096.1\| hypothetical protein SF1188 [Shigella flexneri 2a str. 301], gi\|24112583\|ref\|NP_70...	2.0E-12	[1..83]	[12..94]
gi\|62180360, gi\|... - gi\|62180360\|ref\|YP_216777.1\| putative transglycosylase-associated protein [Salmonella enterica subsp... gi\|224583711, gi... - gi\|224583711\|ref\|YP_002637509.1\| hypothetical protein SPC_1932 [Salmonella enterica subsp. enterica ...	3.0E-12	[1..84]	[1..84]
gi\|114326808, gi... - gi\|114326808\|ref\|YP_743965.1\| integral membrane protein [Granulibacter bethesdensis CGDNIH1], gi\|114...	5.0E-12	[2..83]	[20..98]
gi\|75511769, gi\|... - gi\|75511769\|ref\|ZP_00734398.1\| COG2261: Predicted membrane protein [Escherichia coli 53638], gi\|1884... gi\|75255358, gi\|... - gi\|75255358\|ref\|ZP_00727178.1\| COG2261: Predicted membrane protein [Escherichia coli E22], gi\|193066... gi\|253977392, gi... - gi\|254288085\|ref\|YP_003053833.1\| predicted inner membrane protein [Escherichia coli BL21(DE3)], gi\|2... gi\|75233908, gi\|... - gi\|75233908\|ref\|ZP_00718368.1\| COG2261: Predicted membrane protein [Escherichia coli E110019], gi\|19... gi\|251784702, gi... - gi\|251784702\|ref\|YP_002999006.1\| hypothetical protein B21_01180 [Escherichia coli BL21], gi\|24237697... gi\|253973178, gi... - gi\|254161277\|ref\|YP_003044385.1\| predicted inner membrane protein [Escherichia coli B str. REL606], ... gi\|124500653, gi... - gi\|124528421\|ref\|ZP_01699731.1\| Transglycosylase-associated protein [Escherichia coli B], gi\|1245006... gi\|191168535, gi... - gi\|75228271\|ref\|ZP_00714926.1\| COG2261: Predicted membrane protein [Escherichia coli B7A], gi\|191168... gi\|194425893, gi... - gi\|75212633\|ref\|ZP_00712631.1\| COG2261: Predicted membrane protein [Escherichia coli B171], gi\|19442... gi\|157160698, gi... - gi\|75195348\|ref\|ZP_00705418.1\| COG2261: Predicted membrane protein [Escherichia coli HS], gi\|1571606... gi\|157157734, gi... - gi\|75190250\|ref\|ZP_00703517.1\| COG2261: Predicted membrane protein [Escherichia coli E24377A], gi\|15... gi\|83587339, gi\|... - gi\|83587339\|ref\|ZP_00925967.1\| COG2261: Predicted membrane protein [Escherichia coli 101-1], gi\|1944... gi\|170020437, gi... - gi\|170020437\|ref\|YP_001725391.1\| transglycosylase-associated protein [Escherichia coli ATCC 8739], g... gi\|218360518, gi... - gi\|218553750\|ref\|YP_002386663.1\| putative inner membrane protein with transglycosylase-associated do...	9.0E-12	[1..83]	[1..83]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIIAWIVFG LIAGVIAKLL MPGRDGGGFI LTCILGIVGA VVGGWLATMF GIGGSISGFN  60
   61 LHSFLVAVVG AIVVLVIFRL LRRG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	20.154902
Match:	PF04226.4
Description:	No description for PF04226.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.911	0.259	integral to membrane	a.47.2	t-snare proteins
View	Download	0.926	0.084	membrane	a.7.8	GAT domain
View	Download	0.917	0.050	membrane	a.7.1	Spectrin repeat
View	Download	0.909	0.016	membrane	a.7.2	Enzyme IIa from lactose specific PTS, IIa-lac
View	Download	0.929	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits