YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|190405854
Organism:	Saccharomyces cerevisiae RM11-1a
Length:	58 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190405854.

Description	E-value	Query Range	Subject Range
NOP10_MOUSE - H/ACA ribonucleoprotein complex subunit 3 OS=Mus musculus GN=Nop10 PE=3 SV=1 gi\|149022902, gi... - gi\|186910255\|ref\|NP_001119572.1\| nucleolar protein family A, member 3 [Rattus norvegicus], gi\|149022... NOP10 - NOP10 ribonucleoprotein homolog (yeast) gi\|114656176, gi... - gi\|114656176\|ref\|XP_001165865.1\| PREDICTED: nucleolar protein family A, member 3 isoform 2 [Pan trog...	6.0E-20	[1..58]	[1..58]
CE27803 - status:Confirmed UniProt:Q9XVR8 protein_id:CAB02768.2	4.0E-19	[1..58]	[1..58]
NOP10_YEAST - H/ACA ribonucleoprotein complex subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G... NOP10 - Constituent of small nucleolar ribonucleoprotein particles containing H/ACA-type snoRNAs, which are ... gi\|151944017 - gi\|151944017\|gb\|EDN62310.1\| H/ACA-box snoRNPs component [Saccharomyces cerevisiae YJM789] gi\|190405854 - gi\|190405854\|gb\|EDV09121.1\| H/ACA-box snoRNPs component [Saccharomyces cerevisiae RM11-1a]	4.0E-18	[1..58]	[1..58]
CG7637-PA - This gene is referred to in FlyBase by the symbol Dmel\CG7637 (CG7637, FBgn0033548). It is a protein... gi\|195333227, gi... - gi\|195333227\|ref\|XP_002033293.1\| GM20494 [Drosophila sechellia], gi\|194125263\|gb\|EDW47306.1\| GM20494... gi\|190659358, gi... - gi\|194884175\|ref\|XP_001976171.1\| GG22719 [Drosophila erecta], gi\|190659358\|gb\|EDV56571.1\| GG22719 [D... gi\|220951258, gi... - gi\|220959964\|gb\|ACL92525.1\| CG7637-PA [synthetic construct], gi\|220951258\|gb\|ACL88172.1\| CG7637-PA [... gi\|195582268, gi... - gi\|195582268\|ref\|XP_002080950.1\| GD25957 [Drosophila simulans], gi\|194192959\|gb\|EDX06535.1\| GD25957 ... gi\|195483637, gi... - gi\|195483637\|ref\|XP_002090369.1\| GE13075 [Drosophila yakuba], gi\|194176470\|gb\|EDW90081.1\| GE13075 [D... gi\|194145371, gi... - gi\|195383720\|ref\|XP_002050574.1\| GJ20125 [Drosophila virilis], gi\|194145371\|gb\|EDW61767.1\| GJ20125 [...	5.0E-18	[1..58]	[1..58]
NOP10_ARATH - H/ACA ribonucleoprotein complex subunit 3-like protein OS=Arabidopsis thaliana GN=At2g20490 PE=2 SV=...	7.0E-18	[1..58]	[1..58]
NOP10_SCHPO - H/ACA ribonucleoprotein complex subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=... nop10 - small nucleolar ribonucleoprotein Nop10	2.0E-17	[1..58]	[1..58]
NOP10_SULSO, NO1... - Ribosome biogenesis protein Nop10 OS=Sulfolobus solfataricus GN=SSO7115 PE=3 SV=1, (Q97Z78) Ribosome... NOP10_SULSO - Ribosome biogenesis protein Nop10 OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 113...	7.0E-11	[12..54]	[11..54]
NOP10_SULTO - Ribosome biogenesis protein Nop10 OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140... NOP10_SULTO, NO1... - Ribosome biogenesis protein Nop10 OS=Sulfolobus tokodaii GN=ST0940.1 PE=3 SV=1, (Q973G1) Ribosome bi...	2.0E-10	[15..54]	[14..54]
gi\|14591746 - gi\|14591746\|ref\|NP_142880.1\| H/ACA RNA-protein complex component Nop10p [Pyrococcus horikoshii OT3]	3.0E-9	[15..52]	[14..52]

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Predicted Domain #1

Region A:
Residues: [1-58]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLMYTLGPD GKRIYTLKKV TESGEITKSA HPARFSPDDK YSRQRVTLKK RFGLVPGQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.734	d.15.7	Immunoglobulin-binding domains
View	Download	0.760	b.84.2	Rudiment single hybrid motif
View	Download	0.698	d.10.1	DNA-binding domain
View	Download	0.829	d.9.2	Description not found.
View	Download	0.691	g.26.1	Antifungal protein (AGAFP)
View	Download	0.630	d.9.2	Description not found.
View	Download	0.557	b.4.1	HSP40/DnaJ peptide-binding domain
View	Download	0.550	b.49.1	N-terminal domain of alpha and beta subunits of F1 ATP synthase
View	Download	0.540	d.18.1	ssDNA-binding transcriptional regulator domain
View	Download	0.433	b.1.1	Immunoglobulin
View	Download	0.368	d.19.1	MHC antigen-recognition domain
View	Download	0.354	b.1.1	Immunoglobulin
View	Download	0.354	d.87.1	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
View	Download	0.344	d.15.8	Translation initiation factor IF3, N-terminal domain
View	Download	0.308	d.50.2	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
View	Download	0.259	b.84.1	Single hybrid motif
View	Download	0.236	b.85.6	Molybdenum cofactor biosynthesis protein MoeA, C-terminal domain
View	Download	0.231	d.54.1	Enolase N-terminal domain-like
View	Download	0.230	b.40.2	Bacterial enterotoxins
View	Download	0.222	b.1.2	Fibronectin type III

Predicted functions:

Term	Confidence	Notes
RNA binding	3.61380698450754	bayes_pls_golite062009
nucleic acid binding	2.36306971710899	bayes_pls_golite062009
binding	2.07200237133183	bayes_pls_golite062009
protein binding	0.377070376016177	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: