YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213974638
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. AG3
Length:	367 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213974638.

Description	E-value	Query Range	Subject Range
gi\|197095668, gi... - gi\|197364191\|ref\|YP_002143828.1\| hypothetical protein SSPA2987 [Salmonella enterica subsp. enterica ... gi\|161616346, gi... - gi\|161616346\|ref\|YP_001590311.1\| hypothetical protein SPAB_04155 [Salmonella enterica subsp. enteric... gi\|56415261, gi\|... - gi\|56415261\|ref\|YP_152336.1\| hypothetical protein SPA3200 [Salmonella enterica subsp. enterica serov...	0.0	[1..367]	[1..367]
lcl\|NC_016856.1_... - [gene=yhcG] [protein=putative cytoplasmic protein] [protein_id=YP_005239514.1] [location=3514514..35... gi\|16766627, gi\|... - gi\|16766627\|ref\|NP_462242.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16421890\|...	0.0	[1..367]	[1..367]
gi\|62129473, gi\|... - gi\|62181840\|ref\|YP_218257.1\| hypothetical protein SC3270 [Salmonella enterica subsp. enterica serova... gi\|224585129, gi... - gi\|224585129\|ref\|YP_002638928.1\| hypothetical protein SPC_3402 [Salmonella enterica subsp. enterica ...	0.0	[1..367]	[1..367]
gi\|46135200, gi\|... - gi\|75910705\|ref\|YP_325001.1\| hypothetical protein Ava_4508 [Anabaena variabilis ATCC 29413], gi\|7570...	0.0	[12..353]	[18..353]
gi\|110345046, gi... - gi\|110643454\|ref\|YP_671184.1\| hypothetical protein ECP_3303 [Escherichia coli 536], gi\|110345046\|gb\|... gi\|190905299, gi... - gi\|75236483\|ref\|ZP_00720578.1\| COG4804: Uncharacterized conserved protein [Escherichia coli F11], gi...	0.0	[10..353]	[9..369]
gi\|82778528, gi\|... - gi\|82778528\|ref\|YP_404877.1\| hypothetical protein SDY_3395 [Shigella dysenteriae Sd197], gi\|81242676...	0.0	[10..353]	[9..369]
gi\|209913949, gi... - gi\|209920690\|ref\|YP_002294774.1\| hypothetical protein ECSE_3499 [Escherichia coli SE11], gi\|20991394... gi\|193065382, gi... - gi\|75256590\|ref\|ZP_00728220.1\| COG4804: Uncharacterized conserved protein [Escherichia coli E22], gi... gi\|192956374, gi... - gi\|75234872\|ref\|ZP_00719163.1\| COG4804: Uncharacterized conserved protein [Escherichia coli E110019]... gi\|75209657, gi\|... - gi\|75209657\|ref\|ZP_00709869.1\| COG4804: Uncharacterized conserved protein [Escherichia coli B171], g...	0.0	[10..353]	[9..369]
gi\|27356460, gi\|... - gi\|27383286\|ref\|NP_774815.1\| hypothetical protein blr8175 [Bradyrhizobium japonicum USDA 110], gi\|27...	0.0	[8..353]	[39..368]
gi\|32037569, gi\|... - gi\|32037569\|ref\|ZP_00135841.1\| COG4804: Uncharacterized conserved protein [Pseudomonas aeruginosa UC...	0.0	[7..355]	[12..377]
gi\|13363566, gi\|... - gi\|15833347\|ref\|NP_312120.1\| hypothetical protein ECs4093 [Escherichia coli O157:H7], gi\|13363566\|db... gi\|209400395, gi... - gi\|209400395\|ref\|YP_002272684.1\| hypothetical protein ECH74115_4537 [Escherichia coli O157:H7 str. E... gi\|25339886, gi\|... - pir\|\|H85985 hypothetical protein yhcG [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|208740936, gi... - gi\|208820813\|ref\|ZP_03261133.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|15803754, gi\|... - gi\|15803754\|ref\|NP_289788.1\| hypothetical protein Z4578 [Escherichia coli O157:H7 EDL933], gi\|125178... gi\|217326778, gi... - gi\|217326778\|ref\|ZP_03442861.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|195939414 - gi\|195939414\|ref\|ZP_03084796.1\| hypothetical protein EscherichcoliO157_23888 [Escherichia coli O157:... gi\|189376811, gi... - gi\|189376811\|gb\|EDU95227.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|208734028, gi... - gi\|208812751\|ref\|ZP_03254080.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208729511, gi... - gi\|208809710\|ref\|ZP_03252047.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|168769071, gi... - gi\|189361746\|gb\|EDU80165.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|189366152, gi... - gi\|189366152\|gb\|EDU84568.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189001039, gi... - gi\|189001039\|gb\|EDU70025.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|168777270, gi... - gi\|187767456\|gb\|EDU31300.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|13363566, gi\|... - gi\|15833347\|ref\|NP_312120.1\| hypothetical protein ECs4093 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|189358383, gi... - gi\|189358383\|gb\|EDU76802.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|168751621, gi... - gi\|188014382\|gb\|EDU52504.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|254795163, gi... - gi\|254795163\|ref\|YP_003080000.1\| hypothetical protein ECSP_4189 [Escherichia coli O157:H7 str. TW143...	0.0	[10..353]	[9..343]

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Predicted Domain #1

Region A:
Residues: [1-170]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNPTLAPQS DEYQQIHDGI IRLVDTARTE TVRSINAIMT ATYWEIGRRI VEFEQGGEAR  60
   61 AAYGTQLIER LSVDLSQRYK RGFSNRNLWQ IRTFYLCFQH IEIPQTLSAE SSNLIPLAKT 120
  121 FPLPWSAYVR LLSVKDNDAR TFYEKETLRN GWSVRQLDRQ IATQFYERTL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [171-252]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSHDKSAMLQ QPAPAEPNVL PEQAIRDPFI LEFLNLKDEY SESDLEDALL SHLMDFMLEL  60
   61 GDDFAFVGRQ RRLRIDDSWF RV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.567	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.493	N/A	N/A	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View	Download	0.478	N/A	N/A	a.61.1	Retroviral matrix proteins
View	Download	0.436	N/A	N/A	a.40.1	Calponin-homology domain, CH-domain
View	Download	0.426	N/A	N/A	a.4.2	Methylated DNA-protein cysteine methyltransferase, C-terminal domain

Predicted functions:

Term	Confidence	Notes
binding	0.417015549135074	bayes_pls_golite062009

Predicted Domain #3

Region A:
Residues: [253-367]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLLFFHRRLR CLLLVDLKVG KFGYADAGQM NMYLNYAKEH WTMPGENPPV GLVLCAGKGA  60
   61 GEAHYALTGL PNTIMASEYK VQLPDEKLLT DELIRSQTML ETQLTRGGSL TTEKN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.799	N/A	N/A	d.110.4	SNARE-like
View	Download	0.786	N/A	N/A	d.50.2	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
View	Download	0.640	N/A	N/A	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.586	N/A	N/A	c.47.1	Thioredoxin-like
View	Download	0.559	N/A	N/A	c.47.1	Thioredoxin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: