YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|215262425
Organism:	Aeromonas sobria
Length:	78 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|215262425.

Description	E-value	Query Range	Subject Range
gi\|208218 - gi\|208218\|gb\|AAA72259.1\| dihydrofolate reductase	151.0	[0..1]	[76..1]
gi\|215262448 - gi\|215262448\|emb\|CAT00055.1\| dihydrofolate reductase [Aeromonas sobria] gi\|151840 - gi\|151840\|gb\|AAA26083.1\| dihydrofolate-reductase DYR21_ECOLX - Dihydrofolate reductase type 2 OS=Escherichia coli PE=1 SV=1	149.0	[0..1]	[77..1]
gi\|72256937, gi\|... - gi\|72256937\|gb\|AAZ67355.1\| hypothetical protein [Escherichia coli], gi\|63146058\|gb\|AAY33960.1\| dihyd... gi\|63146064 - gi\|63146064\|gb\|AAY33965.1\| dihydrofolate reductase [Klebsiella pneumoniae] gi\|24209733 - gi\|24209733\|gb\|AAN41433.1\| dihydrofolate reductase [uncultured bacterium] gi\|71060506 - gi\|71060506\|emb\|CAI56200.1\| dihydrofolate reductase [Bordetella bronchiseptica]	149.0	[0..1]	[77..20]
gi\|190349997, gi... - gi\|75708342\|gb\|ABA26534.1\| DfrIIe [Pseudomonas aeruginosa], gi\|75708339\|gb\|ABA26532.1\| DfrIIe [Pseud...	149.0	[0..1]	[77..1]
gi\|82395940 - gi\|82395940\|gb\|ABB72057.1\| type B dihydrofolate reductase DfrB6 [Salmonella enterica subsp. enterica...	144.0	[0..1]	[77..1]

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Predicted Domain #1

Region A:
Residues: [1-78]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQHNNGVST LVAGQFALPS HATFGLGDRV RKKSGAAWQG QVVGWYCTKL TPEGYAVESE  60
   61 SHPGSVQIYP VAALERVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.39794
Match:	1vieA
Description:	STRUCTURE OF DIHYDROFOLATE REDUCTASE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits