YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|205346928, gi...
Organism:	Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066
Length:	572 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|205346928, gi....

Description	E-value	Query Range	Subject Range
gi\|26106541, gi\|... - gi\|26246144\|ref\|NP_752183.1\| prolyl-tRNA synthetase [Escherichia coli CFT073], gi\|26106541\|gb\|AAN787... gi\|91070839, gi\|... - gi\|91209265\|ref\|YP_539251.1\| prolyl-tRNA synthetase [Escherichia coli UTI89], gi\|91070839\|gb\|ABE0572... gi\|226902266, gi... - gi\|237704354\|ref\|ZP_04534835.1\| prolyl-tRNA synthetase [Escherichia sp. 3_2_53FAA], gi\|226902266\|gb\|...	0.0	[1..572]	[19..590]
gi\|189364925, gi... - gi\|189364925\|gb\|EDU83341.1\| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501], gi\|168765... gi\|13359652, gi\|... - gi\|15829450\|ref\|NP_308223.1\| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai], gi\|133596... gi\|188013912, gi... - gi\|188013912\|gb\|EDU52034.1\| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113], gi\|168752... gi\|25293208, gi\|... - pir\|\|D85504 proline tRNA synthetase [imported] - Escherichia coli (strain O157:H7, substrain EDL933... gi\|189371068, gi... - gi\|189371068\|gb\|EDU89484.1\| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869], gi\|1687893... gi\|168782925, gi... - gi\|188999651\|gb\|EDU68637.1\| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076], gi\|168782... gi\|12512925, gi\|... - gi\|15799876\|ref\|NP_285888.1\| prolyl-tRNA synthetase [Escherichia coli O157:H7 EDL933], gi\|12512925\|g... gi\|187767123, gi... - gi\|187767123\|gb\|EDU30967.1\| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196], gi\|168777... SYP_ECO57 - Proline--tRNA ligase OS=Escherichia coli O157:H7 GN=proS PE=3 SV=1 gi\|189361055, gi... - gi\|189361055\|gb\|EDU79474.1\| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486], gi\|168769... gi\|208812619, gi... - gi\|208812619\|ref\|ZP_03253948.1\| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045], gi\|20... gi\|208729249, gi... - gi\|208809448\|ref\|ZP_03251785.1\| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206], gi\|20... gi\|195939891 - gi\|195939891\|ref\|ZP_03085273.1\| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4024] gi\|168802460, gi... - gi\|189375548\|gb\|EDU93964.1\| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508], gi\|1688024... gi\|254590727, gi... - gi\|254791327\|ref\|YP_003076164.1\| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359], gi\|... gi\|217320535, gi... - gi\|217324314\|ref\|ZP_03440398.1\| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588], gi\|2... SYP_ECO5E - Proline--tRNA ligase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=proS PE=3 SV=1 gi\|208741291, gi... - gi\|208821168\|ref\|ZP_03261488.1\| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4042], gi\|20...	0.0	[1..572]	[1..572]
gi\|124529581, gi... - gi\|124529581\|ref\|ZP_01700525.1\| prolyl-tRNA synthetase [Escherichia coli B], gi\|124499737\|gb\|EAY4722... gi\|194439920, gi... - gi\|83584732\|ref\|ZP_00923396.1\| COG0442: Prolyl-tRNA synthetase [Escherichia coli 101-1], gi\|19443992... SYP_SHIF8 - Proline--tRNA ligase OS=Shigella flexneri serotype 5b (strain 8401) GN=proS PE=3 SV=2 SYP_ECOSE - Proline--tRNA ligase OS=Escherichia coli (strain SE11) GN=proS PE=3 SV=1 SYP_ECO8A - Proline--tRNA ligase OS=Escherichia coli O8 (strain IAI1) GN=proS PE=3 SV=1 gi\|251783753, gi... - gi\|251783753\|ref\|YP_002998057.1\| hypothetical protein B21_00192 [Escherichia coli BL21], gi\|24237602... gi\|188494186, gi... - gi\|188494186\|ref\|ZP_03001456.1\| prolyl-tRNA synthetase [Escherichia coli 53638], gi\|188489385\|gb\|EDU... gi\|254160314, gi... - gi\|254160314\|ref\|YP_003043422.1\| prolyl-tRNA synthetase [Escherichia coli B str. REL606], gi\|2539722... SYP_SHIFL - Proline--tRNA ligase OS=Shigella flexneri GN=proS PE=3 SV=4 gi\|254287117, gi... - gi\|254287117\|ref\|YP_003052865.1\| prolyl-tRNA synthetase [Escherichia coli BL21(DE3)], gi\|253976424\|g... SYP_ECOLC - Proline--tRNA ligase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=proS PE=3 SV=1 gi\|193067639, gi... - gi\|75238899\|ref\|ZP_00722881.1\| COG0442: Prolyl-tRNA synthetase [Escherichia coli E110019], gi\|193067... gi\|192931051, gi... - gi\|75258812\|ref\|ZP_00730202.1\| COG0442: Prolyl-tRNA synthetase [Escherichia coli E22], gi\|193063143\|... SYP_SHIB3 - Proline--tRNA ligase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=proS PE=3 SV=1 SYP_ECOHS - Proline--tRNA ligase OS=Escherichia coli O9:H4 (strain HS) GN=proS PE=3 SV=1 gi\|56383174, gi\|... - gi\|56479623\|ref\|NP_706140.2\| prolyl-tRNA synthetase [Shigella flexneri 2a str. 301], gi\|56383174\|gb\|... SYP_SHISS - Proline--tRNA ligase OS=Shigella sonnei (strain Ss046) GN=proS PE=3 SV=1 gi\|30039993, gi\|... - gi\|30061751\|ref\|NP_835922.1\| prolyl-tRNA synthetase [Shigella flexneri 2a str. 2457T], gi\|30039993\|g... SYP_SHIBS - Proline--tRNA ligase OS=Shigella boydii serotype 4 (strain Sb227) GN=proS PE=3 SV=1	0.0	[1..572]	[1..572]
gi\|75229820, gi\|... - gi\|75229820\|ref\|ZP_00716347.1\| COG0442: Prolyl-tRNA synthetase [Escherichia coli B7A], gi\|191167053\|...	0.0	[1..572]	[1..572]
SYP_ECOK1 - Proline--tRNA ligase OS=Escherichia coli O1:K1 / APEC GN=proS PE=3 SV=1 SYP_ECOSM - Proline--tRNA ligase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=proS PE=3 SV=1 SYP_ECO27 - Proline--tRNA ligase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=proS PE=3 SV=1 SYP_ECOL6 - Proline--tRNA ligase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=proS PE=3 SV=... SYP_ECO45 - Proline--tRNA ligase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=proS PE=3 SV=1 SYP_ECO81 - Proline--tRNA ligase OS=Escherichia coli O81 (strain ED1a) GN=proS PE=3 SV=1 sp\|B7UJ96\|SYP_ECO27 - Prolyl-tRNA synthetase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=proS PE=3 SV=1 SYP_ECOUT - Proline--tRNA ligase OS=Escherichia coli (strain UTI89 / UPEC) GN=proS PE=3 SV=2 SYP_ECOL5 - Proline--tRNA ligase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=proS PE=3 SV=1 SYP_ECOL6 - Proline--tRNA ligase OS=Escherichia coli O6 GN=proS PE=3 SV=2 gi\|227884892, gi... - gi\|227884892\|ref\|ZP_04002697.1\| proline--tRNA ligase [Escherichia coli 83972], gi\|227838141\|gb\|EEJ48... gi\|190908349, gi... - gi\|75241739\|ref\|ZP_00725576.1\| COG0442: Prolyl-tRNA synthetase [Escherichia coli F11], gi\|191171415\|...	0.0	[1..572]	[1..572]
SYP_ECO24 - Proline--tRNA ligase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=proS PE=3 SV=1	0.0	[1..572]	[1..572]
SYP_ECOLI - Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA ligase) (ProRS) (Global RNA synthesis factor) - ... SYP_ECOBW - Proline--tRNA ligase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=proS PE=3 SV=1 EG10770 - prolyl-tRNA synthetase / Proline--tRNA ligase gi\|85674379, gi\|... - gi\|89107075\|ref\|AP_000855.1\| prolyl-tRNA synthetase [Escherichia coli str. K-12 substr. W3110], gi\|8... SYP_ECODH - Proline--tRNA ligase OS=Escherichia coli (strain K12 / DH10B) GN=proS PE=3 SV=1 EG10770 - prolyl-tRNA synthetase / Proline--tRNA ligase	0.0	[1..572]	[1..572]
gi\|194416755, gi... - gi\|83568977\|ref\|ZP_00920441.1\| COG0442: Prolyl-tRNA synthetase [Shigella dysenteriae 1012], gi\|19443...	0.0	[1..572]	[1..572]
SYP_SHIDS - Proline--tRNA ligase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=proS PE=3 SV=1	0.0	[1..572]	[1..572]
gi\|194413675, gi... - gi\|75210519\|ref\|ZP_00710670.1\| COG0442: Prolyl-tRNA synthetase [Escherichia coli B171], gi\|194428300...	0.0	[1..572]	[1..572]

Back

Predicted Domain #1

Region A:
Residues: [1-572]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTSQYLLST LKETPADAEV ISHQLMLRAG MIRKLASGLY TWLPTGLRVL KKVENIVREE  60
   61 MNNAGAIEVS MPVVQPADLW QESGRWEQYG PELLRFVDRG ERPFVLGPTH EEVITDLVRN 120
  121 ELSSYKQLPL NFFQIQTKFR DEVRPRFGVM RSREFLMKDA YSFHTSQESL QETYDAMYAA 180
  181 YSRIFSRMGL DFRAVQADTG SIGGNASHEF QVLAQSGEDD IVFSDVSDYA ANIELAEAIA 240
  241 PQTPRAAATQ EMTLVDTPNA KTIAELVEQF NLPIEKTVKT LLVKAVKDSK SPLVALLVRG 300
  301 DHELNEVKAE KLPHVASPLT FATEEEIRAV INAGPGSLGP VNMPIPVIID RTVAAMSDFA 360
  361 AGANIDGKHY FGINWDRDVA TPVVADIRNV VAGDPSPDGQ GTLLIKRGIE VGHIFQLGTK 420
  421 YSEALKASVQ GEDGRNQILT MGCYGIGVTR VVAAAIEQNF DERGIVWPDA IAPFQVAILP 480
  481 MNMHKSFRVQ ELAEKLYSEL RAQGIEVLMD DRKERPGVMF ADMELIGIPH TIVIGDRNLD 540
  541 NDDIEYKYRR SGEKSLIKTG DIVDYLVKAI KG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	111.0
Match:	2j3lA
Description:	No description for 2j3lA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits