YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213425937
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E02-1180
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213425937.

Description	E-value	Query Range	Subject Range
YAEH_SHIFL - UPF0325 protein YaeH OS=Shigella flexneri GN=yaeH PE=3 SV=1 YAEH_ECO57 - UPF0325 protein YaeH OS=Escherichia coli O157:H7 GN=yaeH PE=3 SV=1 YAEH_ECOLI - UPF0325 protein yaeH - Escherichia coli YAEH_ECOL6 - UPF0325 protein yaeH OS=Escherichia coli O6 GN=yaeH PE=3 SV=1 YAEH_ECOK1 - UPF0325 protein YaeH OS=Escherichia coli O1:K1 / APEC GN=yaeH PE=3 SV=1 EG12336 - UPF0325 family protein / Function unknown, UPF0325 family gi\|24050366, gi\|... - gi\|24111600\|ref\|NP_706110.1\| hypothetical protein SF0155 [Shigella flexneri 2a str. 301], gi\|2405036... YAEH_ECOL6 - UPF0325 protein YaeH OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yaeH PE=3 SV=... gi\|30039964, gi\|... - gi\|30061722\|ref\|NP_835893.1\| hypothetical protein S0158 [Shigella flexneri 2a str. 2457T], gi\|300399... EG12336 - UPF0325 family protein / Function unknown, UPF0325 family gi\|15799847, gi\|... - gi\|15799847\|ref\|NP_285859.1\| hypothetical protein Z0175 [Escherichia coli O157:H7 EDL933], gi\|125128... sp\|B7UIL0\|YAEH_ECO27 - UPF0325 protein yaeH OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yaeH PE=3 SV=1 YAEH_ECODH - UPF0325 protein YaeH OS=Escherichia coli (strain K12 / DH10B) GN=yaeH PE=3 SV=1 YAEH_ECOSM - UPF0325 protein YaeH OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=yaeH PE=3 SV=1 gi\|170768412, gi... - gi\|170768412\|ref\|ZP_02902865.1\| conserved hypothetical protein [Escherichia albertii TW07627], gi\|17... gi\|195938154 - gi\|195938154\|ref\|ZP_03083536.1\| hypothetical protein EscherichcoliO157_17266 [Escherichia coli O157:... gi\|208806468, gi... - gi\|208806468\|ref\|ZP_03248805.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|208814086, gi... - gi\|208814086\|ref\|ZP_03255415.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208741054, gi... - gi\|208820931\|ref\|ZP_03261251.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... YAEH_ECO5E - UPF0325 protein YaeH OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yaeH PE=3 SV=1 gi\|188014563, gi... - gi\|188014563\|gb\|EDU52685.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|168755777, gi... - gi\|189357040\|gb\|EDU75459.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|168764329, gi... - gi\|189365651\|gb\|EDU84067.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189360730, gi... - gi\|189360730\|gb\|EDU79149.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|168777001, gi... - gi\|187767686\|gb\|EDU31530.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|189000454, gi... - gi\|189000454\|gb\|EDU69440.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|189371121, gi... - gi\|189371121\|gb\|EDU89537.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|168802319, gi... - gi\|189375676\|gb\|EDU94092.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|254590698, gi... - gi\|254791298\|ref\|YP_003076135.1\| hypothetical protein ECSP_0164 [Escherichia coli O157:H7 str. TW143... gi\|188488507, gi... - gi\|75512176\|ref\|ZP_00734748.1\| COG1196: Chromosome segregation ATPases [Escherichia coli 53638], gi\|... YAEH_ECOL5 - UPF0325 protein YaeH OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=yaeH PE=3 SV=1 YAEH_ECOLU - UPF0325 protein YaeH OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=yaeH PE=3 SV=1 gi\|253972184, gi... - gi\|254160283\|ref\|YP_003043391.1\| hypothetical protein ECB_00162 [Escherichia coli B str. REL606], gi... YAEH_SHISS - UPF0325 protein YaeH OS=Shigella sonnei (strain Ss046) GN=yaeH PE=3 SV=1 YAEH_SHIF8 - UPF0325 protein YaeH OS=Shigella flexneri serotype 5b (strain 8401) GN=yaeH PE=3 SV=1 gi\|254037583, gi... - gi\|254037583\|ref\|ZP_04871660.1\| yaeH [Escherichia sp. 1_1_43], gi\|226840689\|gb\|EEH72691.1\| yaeH [Esc... gi\|75240246, gi\|... - gi\|75240246\|ref\|ZP_00724193.1\| COG1196: Chromosome segregation ATPases [Escherichia coli F11], gi\|19... gi\|253325853, gi... - gi\|254287086\|ref\|YP_003052834.1\| hypothetical protein ECD_00162 [Escherichia coli BL21(DE3)], gi\|253... gi\|75258846, gi\|... - gi\|75258846\|ref\|ZP_00730236.1\| COG1196: Chromosome segregation ATPases [Escherichia coli E22], gi\|19... gi\|251783723, gi... - gi\|251783723\|ref\|YP_002998027.1\| hypothetical protein B21_00161 [Escherichia coli BL21], gi\|24237599... YAEH_ECOBW - UPF0325 protein YaeH OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=yaeH PE=3 SV=1 gi\|21239019, gi\|... - gi\|89107044\|ref\|AP_000824.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|212... gi\|226902236, gi... - gi\|237704324\|ref\|ZP_04534805.1\| yaeH [Escherichia sp. 3_2_53FAA], gi\|226902236\|gb\|EEH88495.1\| yaeH [... YAEH_SHIDS - UPF0325 protein YaeH OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=yaeH PE=3 SV=1 YAEH_ECOUT - UPF0325 protein YaeH OS=Escherichia coli (strain UTI89 / UPEC) GN=yaeH PE=3 SV=1 gi\|227884922, gi... - gi\|227884922\|ref\|ZP_04002727.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783806... YAEH_SHIBS - UPF0325 protein YaeH OS=Shigella boydii serotype 4 (strain Sb227) GN=yaeH PE=3 SV=1 gi\|13359623, gi\|... - gi\|15829421\|ref\|NP_308194.1\| hypothetical protein ECs0167 [Escherichia coli O157:H7 str. Sakai], gi\|... YAEH_SHIB3 - UPF0325 protein YaeH OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=yaeH PE=3 SV=1 YAEH_ECOSE - UPF0325 protein YaeH OS=Escherichia coli (strain SE11) GN=yaeH PE=3 SV=1 YAEH_ECO24 - UPF0325 protein YaeH OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=yaeH PE=3 SV=1 YAEH_ECO27 - UPF0325 protein YaeH OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yaeH PE=3 SV=1 gi\|194418306, gi... - gi\|83569746\|ref\|ZP_00921196.1\| COG1196: Chromosome segregation ATPases [Shigella dysenteriae 1012], ... gi\|217324181, gi... - gi\|217324181\|ref\|ZP_03440265.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|194439102, gi... - gi\|83585480\|ref\|ZP_00924125.1\| COG1196: Chromosome segregation ATPases [Escherichia coli 101-1], gi\|... YAEH_ECO8A - UPF0325 protein YaeH OS=Escherichia coli O8 (strain IAI1) GN=yaeH PE=3 SV=1 gi\|75230474, gi\|... - gi\|75230474\|ref\|ZP_00716955.1\| COG1196: Chromosome segregation ATPases [Escherichia coli B7A], gi\|19... YAEH_ECO45 - UPF0325 protein YaeH OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=yaeH PE=3 SV=1 gi\|75238868, gi\|... - gi\|75238868\|ref\|ZP_00722850.1\| COG1196: Chromosome segregation ATPases [Escherichia coli E110019], g... YAEH_ECO81 - UPF0325 protein YaeH OS=Escherichia coli O81 (strain ED1a) GN=yaeH PE=3 SV=1 YAEH_ECOHS - UPF0325 protein YaeH OS=Escherichia coli O9:H4 (strain HS) GN=yaeH PE=3 SV=1 YAEH_ECO55 - UPF0325 protein YaeH OS=Escherichia coli (strain 55989 / EAEC) GN=yaeH PE=3 SV=1 gi\|75210488, gi\|... - gi\|75210488\|ref\|ZP_00710639.1\| COG1196: Chromosome segregation ATPases [Escherichia coli B171], gi\|1... YAEH_ECO7I - UPF0325 protein YaeH OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=yaeH PE=3 SV=1	221.0	[0..1]	[128..1]
gi\|238784875, gi... - gi\|77957685\|ref\|ZP_00821734.1\| COG1196: Chromosome segregation ATPases [Yersinia bercovieri ATCC 439... gi\|77963179 - gi\|77963179\|ref\|ZP_00826991.1\| COG1196: Chromosome segregation ATPases [Yersinia mollaretii ATCC 439...	219.0	[0..1]	[126..1]
gi\|77972706, gi\|... - gi\|77972706\|ref\|ZP_00828265.1\| COG1196: Chromosome segregation ATPases [Yersinia frederiksenii ATCC ...	219.0	[0..1]	[126..1]
gi\|165939851, gi... - gi\|89105130\|ref\|ZP_01177655.1\| COG1196: Chromosome segregation ATPases [Yersinia pestis biovar Orien... Y514_YERPA - UPF0325 protein YPA_0514 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=YPA_0514 PE=3 SV=1 Y3439_YERPG - UPF0325 protein YpAngola_A3439 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=YpAngola_A3439 PE=3... Y2962_YERPN - UPF0325 protein YPN_2962 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=YPN_2962 PE=3 SV=1 Y1009_YERP3 - UPF0325 protein YpsIP31758_1009 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=Yp... gi\|45442579, gi\|... - gi\|45442579\|ref\|NP_994118.1\| hypothetical protein YP_2811 [Yersinia pestis biovar Microtus str. 9100... gi\|22127017, gi\|... - gi\|22127017\|ref\|NP_670440.1\| hypothetical protein y3141 [Yersinia pestis KIM], gi\|21960064\|gb\|AAM866... gi\|115346819, gi... - gi\|218928208\|ref\|YP_002346083.1\| hypothetical protein YPO1040 [Yersinia pestis CO92], gi\|16121340\|re... Y3007_YERPS - UPF0325 protein YPTB3007 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=YPTB3007 PE=3... Y3007_YERPS - UPF0325 protein YPTB3007 OS=Yersinia pseudotuberculosis GN=YPTB3007 PE=3 SV=1 gi\|149366959, gi... - gi\|149366959\|ref\|ZP_01888992.1\| hypothetical protein YPE_2223 [Yersinia pestis CA88-4125], gi\|149290... Y1673_YERPP - UPF0325 protein YPDSF_1673 OS=Yersinia pestis (strain Pestoides F) GN=YPDSF_1673 PE=3 SV=1 gi\|165920982, gi... - gi\|165927086\|ref\|ZP_02222918.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|166207410, gi... - gi\|166211639\|ref\|ZP_02237674.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166011905, gi... - gi\|166011905\|ref\|ZP_02232803.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167419810, gi... - gi\|167419810\|ref\|ZP_02311563.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167400075, gi... - gi\|167400075\|ref\|ZP_02305593.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167468858 - gi\|167468858\|ref\|ZP_02333562.1\| hypothetical protein YpesF_13399 [Yersinia pestis FV-1] gi\|167425350, gi... - gi\|167425350\|ref\|ZP_02317103.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|229837747, gi... - gi\|229837747\|ref\|ZP_04457907.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229704124\|gb\|EEO... gi\|229697335, gi... - gi\|229840969\|ref\|ZP_04461128.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|229843070, gi... - gi\|229843070\|ref\|ZP_04463220.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... Y1040_YERPE - UPF0325 protein YPO1040/y3141/YP_2811 OS=Yersinia pestis GN=YPO1040 PE=3 SV=1 Y3127_YERPB - UPF0325 protein YPTS_3127 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS_3127 PE=... Y1062_YERPY - UPF0325 protein YPK_1062 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_1062 PE=3...	219.0	[0..1]	[126..1]
gi\|77977752, gi\|... - gi\|77977752\|ref\|ZP_00833193.1\| COG1196: Chromosome segregation ATPases [Yersinia intermedia ATCC 299...	216.0	[0..1]	[126..1]
Y668_PHOLL - UPF0325 protein plu0668 OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 ... Y668_PHOLL - UPF0325 protein plu0668 OS=Photorhabdus luminescens subsp. laumondii GN=plu0668 PE=3 SV=1	214.0	[0..1]	[128..1]
Y1027_PECAS - UPF0325 protein ECA1027 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=ECA1027 ... Y1027_ERWCT - UPF0325 protein ECA1027 OS=Erwinia carotovora subsp. atroseptica GN=ECA1027 PE=3 SV=1	209.0	[0..1]	[127..1]
Y1856_VIBVU, YI5... - (Q8DBG4) Hypothetical UPF0325 protein VV11856, UPF0325 protein VV1_1856 OS=Vibrio vulnificus GN=VV1_... Y2560_VIBVY - UPF0325 protein VV2560 OS=Vibrio vulnificus (strain YJ016) GN=VV2560 PE=3 SV=1 Y1856_VIBVU - UPF0325 protein VV1_1856 OS=Vibrio vulnificus (strain CMCP6) GN=VV1_1856 PE=3 SV=1	206.0	[0..1]	[125..1]
gi\|229519277, gi... - gi\|229519277\|ref\|ZP_04408720.1\| chromosome segregation ATPase [Vibrio cholerae RC9], gi\|229343966\|gb... gi\|229513905, gi... - gi\|229513905\|ref\|ZP_04403367.1\| chromosome segregation ATPase [Vibrio cholerae TMA 21], gi\|229349086... gi\|229369822, gi... - gi\|229607167\|ref\|YP_002877815.1\| chromosome segregation ATPase [Vibrio cholerae MJ-1236], gi\|2293698... gi\|229341134, gi... - gi\|229522209\|ref\|ZP_04411626.1\| chromosome segregation ATPase [Vibrio cholerae TM 11079-80], gi\|2293... gi\|121586181, gi... - gi\|121586181\|ref\|ZP_01675972.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215495... gi\|153217365, gi... - gi\|153217365\|ref\|ZP_01951116.1\| conserved hypothetical protein [Vibrio cholerae 1587], gi\|124113611\|... gi\|121628502, gi... - gi\|121729751\|ref\|ZP_01682190.1\| conserved hypothetical protein [Vibrio cholerae V52], gi\|121628502\|g... gi\|124121449, gi... - gi\|153803006\|ref\|ZP_01957592.1\| conserved hypothetical protein [Vibrio cholerae MZO-3], gi\|124121449... gi\|153221404, gi... - gi\|153221404\|ref\|ZP_01952382.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241197... gi\|126509130, gi... - gi\|153820323\|ref\|ZP_01972990.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12650... gi\|254845098, gi... - gi\|254849393\|ref\|ZP_05238743.1\| conserved hypothetical protein [Vibrio cholerae MO10], gi\|254845098\|... gi\|9656826, gi\|1... - gi\|9656826\|gb\|AAF95408.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N169... gi\|11280806 - gi\|11280806\|pir\|\|G82097 conserved hypothetical protein VC2264 [imported] - Vibrio cholerae (strain N... gi\|126518835, gi... - gi\|229512142\|ref\|ZP_04401621.1\| chromosome segregation ATPase [Vibrio cholerae B33], gi\|229352107\|gb... gi\|194535836, gi... - gi\|254222921\|ref\|ZP_04916785.1\| conserved hypothetical protein [Vibrio cholerae RC385], gi\|194535836... gi\|153828223, gi... - gi\|153828223\|ref\|ZP_01980890.1\| conserved hypothetical protein [Vibrio cholerae 623-39], gi\|14887631... gi\|147675190, gi... - gi\|227118710\|ref\|YP_002820606.1\| hypothetical protein VC395_2380 [Vibrio cholerae O395], gi\|22701416... gi\|229507663, gi... - gi\|229507663\|ref\|ZP_04397168.1\| chromosome segregation ATPase [Vibrio cholerae BX 330286], gi\|229355... gi\|227010276, gi... - gi\|227082388\|ref\|YP_002810939.1\| hypothetical protein VCM66_2187 [Vibrio cholerae M66-2], gi\|2270102...	205.0	[0..1]	[125..11]
Y2321_VIBPA - UPF0325 protein VP2321 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=VP2321 PE=... Y2321_VIBPA, YN2... - (Q87MD5) Hypothetical UPF0325 protein VP2321, UPF0325 protein VP2321 OS=Vibrio parahaemolyticus GN=V... gi\|153840387, gi... - gi\|153840387\|ref\|ZP_01993054.1\| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810], gi\|...	205.0	[0..1]	[125..1]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYDNLKSLGI TNPEEIDRYS LRQEANNDIL KIYFQKDRGE FFAKSVKFKY PRQRKTVVAD  60
   61 GIGQGYKEVQ EISPNLRYVI DELDQICQRD RSELDLKRKI LDDLRHLESV VANKISEIEA 120
  121 DLDKLTRK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits