YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|224467806, gi...
Organism:	Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594
Length:	586 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|224467806, gi....

Description	E-value	Query Range	Subject Range
gi\|62128443, gi\|... - gi\|62180810\|ref\|YP_217227.1\| putative ATP-dependent helicase [Salmonella enterica subsp. enterica se...	0.0	[1..586]	[1..586]
gi\|56412864, gi\|... - gi\|56412864\|ref\|YP_149939.1\| putative helicase [Salmonella enterica subsp. enterica serovar Paratyph... gi\|197093271, gi... - gi\|197361795\|ref\|YP_002141431.1\| putative helicase [Salmonella enterica subsp. enterica serovar Para...	0.0	[1..586]	[1..586]
gi\|91211474, gi\|... - gi\|91211474\|ref\|YP_541460.1\| hypothetical protein UTI89_C2461 [Escherichia coli UTI89], gi\|91073048\|... gi\|226901023, gi... - gi\|237704657\|ref\|ZP_04535138.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|26248567, gi\|... - gi\|26248567\|ref\|NP_754607.1\| hypothetical protein c2721 [Escherichia coli CFT073], gi\|26108972\|gb\|AA... gi\|218365874, gi... - gi\|218559105\|ref\|YP_002392018.1\| putative nucleic acid ATP-dependent helicase [Escherichia coli S88]... gi\|117624382, gi... - gi\|117624382\|ref\|YP_853295.1\| putative ATP-dependet helicase [Escherichia coli APEC O1], gi\|11551350...	0.0	[1..586]	[1..586]
gi\|110642395, gi... - gi\|110642395\|ref\|YP_670125.1\| hypothetical protein ECP_2225 [Escherichia coli 536], gi\|110343987\|gb\|... gi\|75243002, gi\|... - gi\|75243002\|ref\|ZP_00726708.1\| COG1061: DNA or RNA helicases of superfamily II [Escherichia coli F11...	0.0	[1..586]	[1..586]
gi\|12516516, gi\|... - gi\|15802740\|ref\|NP_288767.1\| putative ATP-dependent helicase [Escherichia coli O157:H7 EDL933], gi\|1... gi\|208735036, gi... - gi\|208813759\|ref\|ZP_03255088.1\| putative helicase [Escherichia coli O157:H7 str. EC4045], gi\|2087350... gi\|15832330, gi\|... - gi\|15832330\|ref\|NP_311103.1\| putative ATP-dependent helicase [Escherichia coli O157:H7], gi\|13362545... gi\|208727398, gi... - gi\|208807597\|ref\|ZP_03249934.1\| putative helicase [Escherichia coli O157:H7 str. EC4206], gi\|2087273... gi\|195935566 - gi\|195935566\|ref\|ZP_03080948.1\| putative ATP-dependent helicase [Escherichia coli O157:H7 str. EC402... gi\|189371367, gi... - gi\|189371367\|gb\|EDU89783.1\| putative helicase [Escherichia coli O157:H7 str. EC869], gi\|168789003\|re... gi\|217319273, gi... - gi\|217326906\|ref\|ZP_03442989.1\| putative helicase [Escherichia coli O157:H7 str. TW14588], gi\|217319... gi\|209159710, gi... - gi\|209398310\|ref\|YP_002271598.1\| putative helicase [Escherichia coli O157:H7 str. EC4115], gi\|209159... gi\|208818904, gi... - gi\|208818904\|ref\|ZP_03259224.1\| putative helicase [Escherichia coli O157:H7 str. EC4042], gi\|2087390... gi\|188016124, gi... - gi\|188016124\|gb\|EDU54246.1\| putative helicase [Escherichia coli O157:H7 str. EC4113], gi\|168749591\|r... gi\|189001985, gi... - gi\|189001985\|gb\|EDU70971.1\| putative helicase [Escherichia coli O157:H7 str. EC4076], gi\|168780037\|r... gi\|187771099, gi... - gi\|187771099\|gb\|EDU34943.1\| putative helicase [Escherichia coli O157:H7 str. EC4196], gi\|168773095\|r... gi\|189362992, gi... - gi\|189362992\|gb\|EDU81411.1\| putative helicase [Escherichia coli O157:H7 str. EC4486], gi\|168767808\|r... gi\|189354271, gi... - gi\|189354271\|gb\|EDU72690.1\| putative helicase [Escherichia coli O157:H7 str. EC4401], gi\|168759073\|r... gi\|15832330, gi\|... - gi\|15832330\|ref\|NP_311103.1\| putative ATP-dependent helicase [Escherichia coli O157:H7 str. Sakai], ... gi\|254593485, gi... - gi\|254794085\|ref\|YP_003078922.1\| predicted ATP-dependent helicase [Escherichia coli O157:H7 str. TW1... gi\|25376539, gi\|... - pir\|\|F85857 probable ATP-dependent helicase yejH [imported] - Escherichia coli (strain O157:H7, subs...	0.0	[1..586]	[1..586]
gi\|24113573, gi\|... - gi\|24113573\|ref\|NP_708083.1\| putative ATP-dependent helicase [Shigella flexneri 2a str. 301], gi\|240... gi\|30041880, gi\|... - gi\|30063627\|ref\|NP_837798.1\| putative ATP-dependent helicase [Shigella flexneri 2a str. 2457T], gi\|3...	0.0	[1..586]	[1..586]
gi\|110806163, gi... - gi\|110806163\|ref\|YP_689683.1\| putative ATP-dependent helicase [Shigella flexneri 5 str. 8401], gi\|11... gi\|218432813, gi... - gi\|218705716\|ref\|YP_002413235.1\| putative nucleic acid ATP-dependent helicase [Escherichia coli UMN0... gi\|75259658, gi\|... - gi\|75259658\|ref\|ZP_00730960.1\| COG1061: DNA or RNA helicases of superfamily II [Escherichia coli E22... gi\|75211602, gi\|... - gi\|75211602\|ref\|ZP_00711681.1\| COG1061: DNA or RNA helicases of superfamily II [Escherichia coli B17... gi\|75176195, gi\|... - gi\|75176195\|ref\|ZP_00696353.1\| COG1061: DNA or RNA helicases of superfamily II [Shigella boydii BS51...	0.0	[1..586]	[1..586]
gi\|74312705, gi\|... - gi\|74312705\|ref\|YP_311124.1\| putative ATP-dependent helicase [Shigella sonnei Ss046], gi\|73856182\|gb...	0.0	[1..586]	[1..586]
gi\|81240361, gi\|... - gi\|82776213\|ref\|YP_402562.1\| putative ATP-dependent helicase [Shigella dysenteriae Sd197], gi\|812403...	0.0	[1..586]	[1..586]
gi\|218352531, gi... - gi\|218695799\|ref\|YP_002403466.1\| putative nucleic acid ATP-dependent helicase [Escherichia coli 5598... gi\|209919644, gi... - gi\|209919644\|ref\|YP_002293728.1\| putative ATP-dependent helicase [Escherichia coli SE11], gi\|2099129... gi\|218554754, gi... - gi\|218554754\|ref\|YP_002387667.1\| putative nucleic acid ATP-dependent helicase [Escherichia coli IAI1... gi\|157076768, gi... - gi\|75186982\|ref\|ZP_00700249.1\| COG1061: DNA or RNA helicases of superfamily II [Escherichia coli E24...	0.0	[1..586]	[1..586]

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Predicted Domain #1

Region A:
Residues: [1-586]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFTLRPYQQ EAVDATLSHF RRHRTPAVIV LPTGAGKSLV IAELARVARG RVLVLAHVKE  60
   61 LVAQNHAKYC ALGLEADIFA AGLKRKESQG KVVFGSVQSV ARNLDAFQEE FSLLIVDECH 120
  121 RIGDDEDSQY QQILTHLSKV NPHLRLLGLT ATPFRLGKGW IYQFHYHGMV RGNDNALFRD 180
  181 CIYELPLRYM IKHGYLTPPE RLDMPVVQYD FSRLQAQSNG LFSEADLNRE LKKQQRITPH 240
  241 IISQIMEFAQ TRKGVMIFAA TVEHAKEIVG LLPADDAALI TGDTPGPERD ALIDNFKAQR 300
  301 FRYLVNVSVL TTGFDAPHVD LIAILRPTES VSLYQQIVGR GLRLAPGKTD CLILDYAGNP 360
  361 HDLYAPEVGS PKGKSDNVPV QVFCPACGFA NTFWGKTTAD GTLIEHFGRR CQGWFEDDDG 420
  421 HREQCDFRFR FKNCPQCNAE NDIAARRCRE CDAILVDPDD MLKAALRLKD ALVLRCSGMT 480
  481 MQHGQDEKGE WLKITYYDED GADVSERFRL HTPAQRTAFE QLFIRPHTRT PGVPLRWITA 540
  541 ADIVAQQALL RHPDFVVARM KGQYWQVREK VFDYEGRFRR AHELRG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.69897
Match:	1oywA
Description:	Structure of the RecQ Catalytic Core
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.37148167194523	bayes_pls_golite062009
hydrolase activity	0.226001870533921	bayes_pls_golite062009
transcription factor activity	0.219681379631971	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: