YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213161952
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E00-7866
Length:	490 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213161952.

Description	E-value	Query Range	Subject Range
DER_ECOL6, ENGA_... - GTP-binding protein engA OS=Escherichia coli O6 GN=engA PE=3 SV=2, GTPase Der OS=Escherichia coli O6... gi\|191172582, gi... - gi\|75240464\|ref\|ZP_00724398.1\| COG1160: Predicted GTPases [Escherichia coli F11], gi\|191172582\|ref\|Z... DER_ECOL5 - GTPase Der OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=der PE=3 SV=1 DER_ECOL6 - GTPase Der OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=der PE=3 SV=2 DER_ECO7I - GTPase Der OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=der PE=3 SV=1	9.0E-91	[1..490]	[1..490]
gi\|226901387, gi... - gi\|237705021\|ref\|ZP_04535502.1\| GTP-binding protein EngA [Escherichia sp. 3_2_53FAA], gi\|226901387\|g... gi\|91211837, gi\|... - gi\|91211837\|ref\|YP_541823.1\| probable GTP-binding protein EngA [Escherichia coli UTI89], gi\|91073411... gi\|115513864, gi... - gi\|117624740\|ref\|YP_853653.1\| GTP-binding protein EngA [Escherichia coli APEC O1], gi\|115513864\|gb\|A...	1.0E-90	[1..490]	[14..503]
DER_SHIF8 - GTPase Der OS=Shigella flexneri serotype 5b (strain 8401) GN=der PE=3 SV=1 gi\|30042158, gi\|... - gi\|30063903\|ref\|NP_838074.1\| GTP-binding protein EngA [Shigella flexneri 2a str. 2457T], gi\|30042158...	2.0E-90	[1..490]	[1..490]
gi\|26248875, gi\|... - gi\|26248875\|ref\|NP_754915.1\| GTP-binding protein EngA [Escherichia coli CFT073], gi\|26109281\|gb\|AAN8...	2.0E-90	[1..490]	[14..503]
DER_SHIB3 - GTPase Der OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=der PE=3 SV=1	3.0E-90	[1..490]	[1..490]
EG14207 - GTPase; multicopy suppressor of ftsJ / Multicopy suppressor of ftsJ, GTPase, ribosome biogenesis; de... ENGA_ECOLI - GTP-binding protein engA (Double era-like domain protein) - Escherichia coli DER_ECO5E - GTPase Der OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=der PE=3 SV=1 gi\|208741557, gi... - gi\|208821434\|ref\|ZP_03261754.1\| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC404... gi\|217319280, gi... - gi\|217326913\|ref\|ZP_03442996.1\| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. TW145... DER_ECOSE - GTPase Der OS=Escherichia coli (strain SE11) GN=der PE=3 SV=1 gi\|124498697, gi... - gi\|124531251\|ref\|ZP_01701593.1\| small GTP-binding protein [Escherichia coli B], gi\|124498697\|gb\|EAY4... DER_ECO55 - GTPase Der OS=Escherichia coli (strain 55989 / EAEC) GN=der PE=3 SV=1 DER_ECO8A - GTPase Der OS=Escherichia coli O8 (strain IAI1) GN=der PE=3 SV=1 gi\|192929261, gi... - gi\|75257935\|ref\|ZP_00729409.1\| COG1160: Predicted GTPases [Escherichia coli E22], gi\|193064026\|ref\|Z... gi\|75515850, gi\|... - gi\|75515850\|ref\|ZP_00737985.1\| COG1160: Predicted GTPases [Escherichia coli 53638], gi\|188494621\|ref... EG14207 - GTPase; multicopy suppressor of ftsJ / Multicopy suppressor of ftsJ, GTPase, ribosome biogenesis; de... gi\|89109317, gi\|... - gi\|89109317\|ref\|AP_003097.1\| predicted GTP-binding protein [Escherichia coli str. K-12 substr. W3110... gi\|194437572, gi... - gi\|83586840\|ref\|ZP_00925471.1\| COG1160: Predicted GTPases [Escherichia coli 101-1], gi\|194437572\|ref... DER_ECO24 - GTPase Der OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=der PE=3 SV=1 DER_ECOHS - GTPase Der OS=Escherichia coli O9:H4 (strain HS) GN=der PE=3 SV=1 gi\|194414623, gi... - gi\|75211477\|ref\|ZP_00711567.1\| COG1160: Predicted GTPases [Escherichia coli B171], gi\|194427302\|ref\|... gi\|75229157, gi\|... - gi\|75229157\|ref\|ZP_00715729.1\| COG1160: Predicted GTPases [Escherichia coli B7A], gi\|191167672\|ref\|Z... DER_ECOLC - GTPase Der OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=der PE=3 SV=1 DER_ECO57 - GTPase Der OS=Escherichia coli O157:H7 GN=der PE=3 SV=1 gi\|168773575, gi... - gi\|187770576\|gb\|EDU34420.1\| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4196], ... DER_ECOBW - GTPase Der OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=der PE=3 SV=1 gi\|168768603, gi... - gi\|189362188\|gb\|EDU80607.1\| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4486], ... gi\|251785836, gi... - gi\|251785836\|ref\|YP_003000140.1\| hypothetical protein B21_02365 [Escherichia coli BL21], gi\|24237810... gi\|168787857, gi... - gi\|189372347\|gb\|EDU90763.1\| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC869], g... gi\|254289246, gi... - gi\|254289246\|ref\|YP_003054994.1\| GTP-binding protein EngA [Escherichia coli BL21(DE3)], gi\|253978553... gi\|189003270, gi... - gi\|189003270\|gb\|EDU72256.1\| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4076], ... gi\|253974386, gi... - gi\|254162485\|ref\|YP_003045593.1\| GTP-binding protein EngA [Escherichia coli B str. REL606], gi\|25397... DER_ECODH - GTPase Der OS=Escherichia coli (strain K12 / DH10B) GN=der PE=3 SV=1 gi\|254794457, gi... - gi\|254794457\|ref\|YP_003079294.1\| 50S ribosome associated factor involved in the biogenesis and stabi... gi\|168798882, gi... - gi\|189378586\|gb\|EDU97002.1\| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC508], g... gi\|208814338, gi... - gi\|208814338\|ref\|ZP_03255667.1\| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC404... gi\|195936653 - gi\|195936653\|ref\|ZP_03082035.1\| GTP-binding protein EngA [Escherichia coli O157:H7 str. EC4024] gi\|161367551 - gi\|161367551\|ref\|NP_289064.2\| GTP-binding protein EngA [Escherichia coli O157:H7 EDL933] gi\|188017037, gi... - gi\|188017037\|gb\|EDU55159.1\| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4113], ... gi\|162139766 - gi\|162139766\|ref\|NP_311400.2\| GTP-binding protein EngA [Escherichia coli O157:H7 str. Sakai] gi\|189368460, gi... - gi\|189368460\|gb\|EDU86876.1\| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4501], ... gi\|168756283, gi... - gi\|189356591\|gb\|EDU75010.1\| ribosome-associated GTPase EngA [Escherichia coli O157:H7 str. EC4401], ...	3.0E-90	[1..490]	[1..490]
gi\|194432132, gi... - gi\|83570731\|ref\|ZP_00922174.1\| COG1160: Predicted GTPases [Shigella dysenteriae 1012], gi\|194432132\|...	3.0E-90	[1..490]	[1..490]
gi\|32455227 - gi\|32455227\|gb\|AAP83329.1\| putative GTP-binding protein [Salmonella enteritidis] gi\|32455227\|gb\|A... - putative GTP-binding protein [Salmonella enteritidis]	4.0E-90	[1..490]	[1..490]
DER_SALCH - GTPase Der OS=Salmonella choleraesuis (strain SC-B67) GN=der PE=3 SV=1 ENGA_SALCH, DER_... - GTP-binding protein engA OS=Salmonella choleraesuis GN=engA PE=3 SV=1, GTPase Der OS=Salmonella chol... DER_SALPC - GTPase Der OS=Salmonella paratyphi C (strain RKS4594) GN=der PE=3 SV=1 ENGA_SALCH - GTP-binding protein engA OS=Salmonella choleraesuis GN=engA PE=3 SV=1	5.0E-90	[1..490]	[1..490]
gi\|238912639 - gi\|238912639\|ref\|ZP_04656476.1\| GTP-binding protein EngA [Salmonella enterica subsp. enterica serova... lcl\|NC_016856.1_... - [gene=engA] [protein=GTP-binding protein EngA] [protein_id=YP_005238616.1] [location=complement(2703... ENGA_SALTY, DER_... - GTP-binding protein engA OS=Salmonella typhimurium GN=engA PE=1 SV=2, GTPase Der OS=Salmonella typhi... DER_SALPK - GTPase Der OS=Salmonella paratyphi A (strain AKU_12601) GN=der PE=3 SV=1 gi\|197264629, gi... - gi\|197264629\|ref\|ZP_03164703.1\| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica... gi\|205325405, gi... - gi\|205325405\|gb\|EDZ13244.1\| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica ser... ENGA_SALTY - GTP-binding protein engA OS=Salmonella typhimurium GN=engA PE=3 SV=2 DER_SALNS - GTPase Der OS=Salmonella newport (strain SL254) GN=der PE=3 SV=1 gi\|195630729, gi... - gi\|195630729\|gb\|EDX49321.1\| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica ser... gi\|205349650, gi... - gi\|205349650\|gb\|EDZ36281.1\| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica ser... gi\|167991827, gi... - gi\|205329876\|gb\|EDZ16640.1\| ribosome-associated GTPase EngA [Salmonella enterica subsp. enterica ser... DER_SALPA - GTPase Der OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=der PE=3 SV=1 ENGA_SALPA, DER_... - GTP-binding protein engA OS=Salmonella paratyphi A GN=engA PE=3 SV=1, GTPase Der OS=Salmonella parat... DER_SALTY - GTPase Der OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=der PE=1 SV=2	5.0E-90	[1..490]	[1..490]

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Predicted Domain #1

Region A:
Residues: [1-490]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPVVALVGR PNVGKSTLFN RLTRTRDALV ADFPGLTRDR KYGRAEVEGR EFICIDTGGI  60
   61 DGTEDGVETR MAEQSLLAIE EADVVLFMVD ARAGLMPADE AIAKHLRSRE KPTFLVANKT 120
  121 DGLDPDQAVV DFYSLGLGEI YPIAASHGRG VLSLLEHVLL PWMDDVAPQE EVDEDAEYWA 180
  181 QFEAEQNGEE APEDDFDPQS LPIKLAIVGR PNVGKSTLTN RILGEERVVV YDMPGTTRDS 240
  241 IYIPMERDER EYVLIDTAGV RKRGKITDAV EKFSVIKTLQ AIEDANVVLL VIDAREGISD 300
  301 QDLSLLGFIL NSGRSLVIVV NKWDGLSQEV KEQVKETLDF RLGFIDFARV HFISALHGSG 360
  361 VGNLFESVRE AYDSSTRRVS TAMLTRIMTM AVEDHQPPLV RGRRVKLKYA HTGGYNPPIV 420
  421 VIHGNQVKDL PDSYKRYLMN YFRKSLEVMG TPIRIQFKEG ENPYANKRNT LTPTQMRKRK 480
  481 RLMKHIKKSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.69897
Match:	2hjgA
Description:	No description for 2hjgA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits