YRC Public Data Repository - Protein Structure Prediction

Protein:	S10A9_RAT
Organism:	Rattus norvegicus
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for S10A9_RAT.

Description	E-value	Query Range	Subject Range
gi\|73961682 - gi\|73961682\|ref\|XP_547585.2\| PREDICTED: similar to Calgranulin B (Migration inhibitory factor-relate...	134.0	[0..1]	[113..223]
gi\|109016674 - gi\|109016674\|ref\|XP_001108718.1\| PREDICTED: similar to Protein S100-A11 (S100 calcium-binding protei...	121.0	[0..1]	[108..434]
gi\|50761685 - gi\|50761685\|ref\|XP_429152.1\| PREDICTED: similar to S100Z protein [Gallus gallus]	121.0	[0..3]	[102..365]
gi\|478287, gi\|16... - gi\|488157\|gb\|AAA18214.1\| intracellular calcium-binding protein, pir\|\|JN0686 calgranulin B - rat, gi...	117.0	[0..1]	[113..1]
S10A9_MOUSE - Protein S100-A9 OS=Mus musculus GN=S100a9 PE=1 SV=3	115.0	[0..1]	[113..1]
gi\|114052490, gi... - gi\|84201664\|gb\|AAI11627.1\| S100 calcium binding protein A9 [Bos taurus], gi\|114052490\|ref\|NP_0010397...	114.0	[0..5]	[113..4]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAKTGSQLE RSISTIINVF HQYSRKYGHP DTLNKAEFKE MVNKDLPNFL KREKRNENLL  60
   61 RDIMEDLDTN QDNQLSFEEC MMLMGKLIFA CHEKLHENNP RGHDHSHGKG CGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.045757
Match:	1xk4C
Description:	Crystal structure of the complex between human S100A8 (MRP8) and S100A9 (MRP14)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits