YRC Public Data Repository - Protein Structure Prediction

Protein:	S10A8_RAT
Organism:	Rattus norvegicus
Length:	89 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for S10A8_RAT.

Description	E-value	Query Range	Subject Range
gi\|50748592 - gi\|50748592\|ref\|XP_421316.1\| PREDICTED: similar to calmodulin 1; Calmodulin 1 (phosphorylase kinase,...	116.0	[0..3]	[78..590]
gi\|76612513 - gi\|76612513\|ref\|XP_595126.2\| PREDICTED: similar to Calgizzarin (S100 calcium-binding protein A11) (S...	112.0	[0..2]	[88..86]
gi\|109016674 - gi\|109016674\|ref\|XP_001108718.1\| PREDICTED: similar to Protein S100-A11 (S100 calcium-binding protei...	111.0	[0..2]	[88..440]
gi\|94471603 - gi\|94471603\|gb\|ABF21069.1\| mitochondrial calcium sensor cameleon 4mtD3cpv [synthetic construct]	110.0	[0..3]	[78..441]
S10AB_RAT - Protein S100-A11 OS=Rattus norvegicus GN=S100a11 PE=3 SV=1	105.0	[0..1]	[88..1]

Back

Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATELEKALS NVIEVYHNYS GIKGNHHALY RDDFRKMVTT ECPQFVQNKN TESLFKELDV  60
   61 NSDNAINFEE FLVLVIRVGV AAHKDSHKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.69897
Match:	1mr8A
Description:	Calcyclin (S100)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits