YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|224108844, gi...
Organism:	Populus trichocarpa
Length:	181 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|224108844, gi....

Description	E-value	Query Range	Subject Range
gi\|34909214, gi\|... - gi\|34909214\|ref\|NP_915954.1\| putative ADP-ribosylation factor [Oryza sativa (japonica cultivar-group...	204.0	[0..1]	[180..179]
gi\|47220340 - gi\|47220340\|emb\|CAF98439.1\| unnamed protein product [Tetraodon nigroviridis]	203.0	[0..1]	[181..1]
arf-1.2 - ARF status:Confirmed UniProt:Q10943 protein_id:AAK18851.1	201.0	[0..1]	[181..1]
ARF1_SOLTU - ADP-ribosylation factor 1 OS=Solanum tuberosum PE=2 SV=2	201.0	[0..1]	[180..1]
gi\|50198855, gi\|... - gi\|50198855\|gb\|AAT70455.1\| At1g10630 [Arabidopsis thaliana], gi\|48310130\|gb\|AAT41759.1\| At1g10630 [A...	200.0	[0..1]	[181..1]
gi\|255548347, gi... - gi\|255548347\|ref\|XP_002515230.1\| ADP-ribosylation factor, arf, putative [Ricinus communis], gi\|25554... gi\|225437665, gi... - gi\|225450510\|ref\|XP_002281047.1\| PREDICTED: similar to ADP-ribosylation factor [Vitis vinifera], gi\|... gi\|222861047, gi... - gi\|224128225\|ref\|XP_002320274.1\| predicted protein [Populus trichocarpa], gi\|224124602\|ref\|XP_002330... gi\|77812440 - gi\|77812440\|gb\|ABB03801.1\| ADP ribosylation factor 002 [Daucus carota] gi\|217072062, gi... - gi\|92895422\|gb\|ABE92700.1\| Ras GTPase [Medicago truncatula], gi\|92868874\|gb\|ABE78831.1\| Ras GTPase [...	200.0	[0..1]	[181..1]
gi\|157773475 - gi\|157773475\|ref\|XP_001664802.1\| hypothetical protein CBG09004 [Caenorhabditis briggsae AF16] CRE04726 - RP22588 WBGene00055607 locus:Cre-arf-1.2 status:Confirmed ARF12_CAEBR - ADP-ribosylation factor 1-like 2 OS=Caenorhabditis briggsae GN=arf-1.2 PE=3 SV=3	200.0	[0..1]	[181..1]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLSFTKLLG RLFSKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN  60
   61 ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV GEARDELHRM LNEDELRDAV 120
  121 LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNISSK 180
  181 A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.30103
Match:	1r8qA
Description:	FULL-LENGTH ARF1-GDP-MG IN COMPLEX WITH BREFELDIN A AND A SEC7 DOMAIN
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits