YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220958760, gi...
Organism:	synthetic construct
Length:	156 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220958760, gi....

Description	E-value	Query Range	Subject Range
gi\|85861019 - gi\|85861019\|gb\|ABC86459.1\| IP05061p [Drosophila melanogaster]	260.0	[0..1]	[156..25]
gi\|114663046 - gi\|114663046\|ref\|XP_001160459.1\| PREDICTED: similar to CGI-128 protein isoform 2 [Pan troglodytes] ENSCJAT00000032289 - null	258.0	[0..5]	[155..8]
gi\|54642408, gi\|... - gi\|54642408\|gb\|EAL31157.1\| GA20712 [Drosophila pseudoobscura pseudoobscura], gi\|125979221\|ref\|XP_001... gi\|125979221\|ref... - GA20712-PA [Drosophila pseudoobscura], GA20712 [Drosophila pseudoobscura pseudoobscura]	255.0	[0..1]	[156..1]
gi\|49900500, gi\|... - gi\|68364030\|ref\|XP_686385.1\| PREDICTED: hypothetical protein isoform 1 [Danio rerio], gi\|50539966\|re...	253.0	[0..3]	[156..5]
FAM96B - family with sequence similarity 96, member B	252.0	[0..5]	[155..12]
gi\|109508323, gi... - ref\|XP_214626.1\| similar to Hypothetical protein CGI-128 homolog [Rattus norvegicus], gi\|221325680\|r...	250.0	[0..5]	[155..14]
MIP18_MOUSE - Mitotic spindle-associated MMXD complex subunit MIP18 OS=Mus musculus GN=Fam96b PE=1 SV=1	250.0	[0..5]	[155..12]
gi\|76640726 - gi\|76640726\|ref\|XP_871232.1\| PREDICTED: similar to UPF0195 protein FAM96B [Bos taurus]	250.0	[0..5]	[155..12]
gi\|47224723 - gi\|47224723\|emb\|CAG00317.1\| unnamed protein product [Tetraodon nigroviridis]	250.0	[0..3]	[156..5]
gi\|73957533 - gi\|73957533\|ref\|XP_854044.1\| PREDICTED: similar to Hypothetical UPF0195 protein CGI-128 [Canis famil...	250.0	[0..5]	[155..156]

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Predicted Domain #1

Region A:
Residues: [1-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTEIENINP NVYDRIKERV LTANEEDENV PDPFDKREIF DLIRNINDPE HPLTLEELHV  60
   61 VQEDLIRIND SQNSVHISFT PTIPHCSMAT LIGLSIRVKL LRSLPPRFKV TVEITPGTHA 120
  121 SELAVNKQLA DKERVAAALE NNHLAEVINQ CIAAKG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.76
Match:	1uwdA
Description:	Conserved Hypothetical Protein TM0487 from Thermotoga maritima
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.544819800248164	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: