YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|205274172, gi...
Organism:	Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91
Length:	329 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|205274172, gi....

Description	E-value	Query Range	Subject Range
gi\|197096280, gi... - gi\|197364803\|ref\|YP_002144440.1\| putative acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|56130131, gi\|... - gi\|56415874\|ref\|YP_152949.1\| putative acetyltransferase [Salmonella enterica subsp. enterica serovar...	6.0E-90	[1..329]	[1..329]
YIID_ECOL6 - Uncharacterized protein YiiD OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yiiD ... YIID_ECO57 - Uncharacterized protein YiiD OS=Escherichia coli O157:H7 GN=yiiD PE=3 SV=1 EG11853 - GNAT family putative N-acetyltransferase / GNAT family putative N-acetyltransferase YIID_ECOLI - Hypothetical protein yiiD - Escherichia coli gi\|218371398, gi... - gi\|218701412\|ref\|YP_002409041.1\| putative acetyltransferase [Escherichia coli IAI39], gi\|218371398\|e... gi\|218697600, gi... - gi\|218697600\|ref\|YP_002405267.1\| putative acetyltransferase [Escherichia coli 55989], gi\|218354332\|e... gi\|218367727, gi... - gi\|218560958\|ref\|YP_002393871.1\| putative acetyltransferase [Escherichia coli S88], gi\|218367727\|emb... gi\|218363217, gi... - gi\|218556448\|ref\|YP_002389362.1\| putative acetyltransferase [Escherichia coli IAI1], gi\|218363217\|em... gi\|191173880, gi... - gi\|191173880\|ref\|ZP_03035400.1\| acetyltransferase, GNAT family [Escherichia coli F11], gi\|190905838\|... gi\|189373323, gi... - gi\|189404873\|ref\|ZP_02811739.2\| acetyltransferase, GNAT family [Escherichia coli O157:H7 str. EC869]... gi\|170083360, gi... - gi\|170083360\|ref\|YP_001732680.1\| acetyltransferase [Escherichia coli str. K-12 substr. DH10B], gi\|16... gi\|218358671, gi... - gi\|218551130\|ref\|YP_002384921.1\| putative acetyltransferase [Escherichia fergusonii ATCC 35469], gi\|... gi\|209159636, gi... - gi\|209398236\|ref\|YP_002273405.1\| acetyltransferase, GNAT family [Escherichia coli O157:H7 str. EC411... gi\|194438274, gi... - gi\|194438274\|ref\|ZP_03070365.1\| acetyltransferase, GNAT family [Escherichia coli 101-1], gi\|19442271... gi\|192958582, gi... - gi\|193067962\|ref\|ZP_03048927.1\| acetyltransferase, GNAT family [Escherichia coli E110019], gi\|192958... EG11853 - GNAT family putative N-acetyltransferase / GNAT family putative N-acetyltransferase gi\|81247645, gi\|... - gi\|82546234\|ref\|YP_410181.1\| putative acetyltransferase [Shigella boydii Sb227], gi\|81247645\|gb\|ABB6... YIID_ECOL6 - Uncharacterized protein yiiD OS=Escherichia coli O6 GN=yiiD PE=4 SV=1 gi\|85676171, gi\|... - gi\|89110140\|ref\|AP_003920.1\| predicted acetyltransferase [Escherichia coli str. K-12 substr. W3110],... gi\|13364287, gi\|... - gi\|15834065\|ref\|NP_312838.1\| putative acetyltransferase [Escherichia coli O157:H7 str. Sakai], gi\|13... gi\|110644226, gi... - gi\|110644226\|ref\|YP_671956.1\| putative acetyltransferase [Escherichia coli 536], gi\|110345818\|gb\|ABG... gi\|91075003, gi\|... - gi\|91213429\|ref\|YP_543415.1\| putative acetyltransferase [Escherichia coli UTI89], gi\|91075003\|gb\|ABE... gi\|124527549, gi... - gi\|124527549\|ref\|ZP_01699014.1\| thioesterase domain, putative [Escherichia coli B], gi\|124501251\|gb\|... gi\|227837635, gi... - gi\|227885377\|ref\|ZP_04003182.1\| GNAT family acetyltransferase [Escherichia coli 83972], gi\|227837635... gi\|117626156, gi... - gi\|117626156\|ref\|YP_859479.1\| acetyltransferase [Escherichia coli APEC O1], gi\|115515280\|gb\|ABJ03355... gi\|238902955, gi... - gi\|238902955\|ref\|YP_002928751.1\| putative acetyltransferase [Escherichia coli BW2952], gi\|238862114\|... gi\|237702917, gi... - gi\|237702917\|ref\|ZP_04533398.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|254039097, gi... - gi\|254039097\|ref\|ZP_04873147.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22683853... gi\|251787152, gi... - gi\|251787152\|ref\|YP_003001456.1\| hypothetical protein B21_03722 [Escherichia coli BL21], gi\|24237942... gi\|254595282, gi... - gi\|254795882\|ref\|YP_003080719.1\| predicted acetyltransferase [Escherichia coli O157:H7 str. TW14359]... gi\|254290589, gi... - gi\|254290589\|ref\|YP_003056337.1\| putative acetyltransferase [Escherichia coli BL21(DE3)], gi\|2539798...	2.0E-88	[1..329]	[1..329]
gi\|24054458, gi\|... - gi\|24115178\|ref\|NP_709688.1\| putative acetyltransferase [Shigella flexneri 2a str. 301], gi\|24054458... gi\|30064823, gi\|... - gi\|30064823\|ref\|NP_838994.1\| putative acetyltransferase [Shigella flexneri 2a str. 2457T], gi\|300430...	1.0E-87	[1..329]	[1..329]
gi\|81243087, gi\|... - gi\|82778939\|ref\|YP_405288.1\| putative acetyltransferase [Shigella dysenteriae Sd197], gi\|81243087\|gb...	1.0E-87	[1..329]	[1..329]
gi\|74314390, gi\|... - gi\|74314390\|ref\|YP_312809.1\| putative acetyltransferase [Shigella sonnei Ss046], gi\|73857867\|gb\|AAZ9...	2.0E-87	[1..329]	[1..329]
gi\|25364712 - gi\|25364712\|pir\|\|B86077 galactoside O-acetyltransferase (EC 2.3.1.18), probable yiiD [imported] - Es... gi\|12518774, gi\|... - gi\|15804474\|ref\|NP_290514.1\| putative acetyltransferase [Escherichia coli O157:H7 EDL933], gi\|125187...	3.0E-87	[1..329]	[1..329]
gi\|215489216, gi... - gi\|215489216\|ref\|YP_002331647.1\| predicted acetyltransferase [Escherichia coli O127:H6 str. E2348/69... gi\|217320444, gi... - gi\|217324223\|ref\|ZP_03440307.1\| acetyltransferase, GNAT family [Escherichia coli O157:H7 str. TW1458... gi\|208741586, gi... - gi\|208821463\|ref\|ZP_03261783.1\| acetyltransferase, GNAT family [Escherichia coli O157:H7 str. EC4042... tr\|A0A120MCQ0\|A0... - Uncharacterized protein OS=Escherichia coli (strain K12) GN=C3026_21015 PE=4 SV=1 gi\|209921362, gi... - gi\|209921362\|ref\|YP_002295446.1\| putative acetyltransferase [Escherichia coli SE11], gi\|209914621\|db... gi\|189378104, gi... - gi\|189378104\|gb\|EDU96520.1\| acetyltransferase, GNAT family [Escherichia coli O157:H7 str. EC508], gi... gi\|75513963, gi\|... - gi\|75513963\|ref\|ZP_00736316.1\| COG0454: Histone acetyltransferase HPA2 and related acetyltransferase... gi\|169757028, gi... - gi\|170022100\|ref\|YP_001727054.1\| thioesterase domain-containing protein [Escherichia coli ATCC 8739]... gi\|75238329 - gi\|75238329\|ref\|ZP_00722328.1\| COG0454: Histone acetyltransferase HPA2 and related acetyltransferase... gi\|168775290, gi... - gi\|187769213\|gb\|EDU33057.1\| acetyltransferase, GNAT family [Escherichia coli O157:H7 str. EC4196], g... gi\|75237851 - gi\|75237851\|ref\|ZP_00721866.1\| COG0454: Histone acetyltransferase HPA2 and related acetyltransferase... gi\|189001534, gi... - gi\|189001534\|gb\|EDU70520.1\| acetyltransferase, GNAT family [Escherichia coli O157:H7 str. EC4076], g... gi\|191166423, gi... - gi\|75230409\|ref\|ZP_00716895.1\| COG0454: Histone acetyltransferase HPA2 and related acetyltransferase... gi\|195937527 - gi\|195937527\|ref\|ZP_03082909.1\| acetyltransferase [Escherichia coli O157:H7 str. EC4024] gi\|75197761, gi\|... - gi\|75197761\|ref\|ZP_00707831.1\| COG0454: Histone acetyltransferase HPA2 and related acetyltransferase... gi\|208812271, gi... - gi\|208812271\|ref\|ZP_03253600.1\| acetyltransferase, GNAT family [Escherichia coli O157:H7 str. EC4045... gi\|83586263 - gi\|83586263\|ref\|ZP_00924899.1\| COG0454: Histone acetyltransferase HPA2 and related acetyltransferase... gi\|170680652, gi... - gi\|170680652\|ref\|YP_001746218.1\| acetyltransferase [Escherichia coli SMS-3-5], gi\|170518370\|gb\|ACB16... gi\|170769631, gi... - gi\|170769631\|ref\|ZP_02904084.1\| acetyltransferase, GNAT family [Escherichia albertii TW07627], gi\|17... gi\|168761740, gi... - gi\|189367847\|gb\|EDU86263.1\| acetyltransferase, GNAT family [Escherichia coli O157:H7 str. EC4501], g... gi\|189362635, gi... - gi\|189362635\|gb\|EDU81054.1\| acetyltransferase, GNAT family [Escherichia coli O157:H7 str. EC4486], g... gi\|188016806, gi... - gi\|188016806\|gb\|EDU54928.1\| acetyltransferase, GNAT family [Escherichia coli O157:H7 str. EC4113], g... gi\|189357130, gi... - gi\|189357130\|gb\|EDU75549.1\| acetyltransferase, GNAT family [Escherichia coli O157:H7 str. EC4401], g... gi\|253326520, gi... - gi\|253775476\|ref\|YP_003038307.1\| thioesterase domain protein [Escherichia coli BL21(DE3)], gi\|253326...	2.0E-84	[17..329]	[1..313]
gi\|157078338, gi... - gi\|75188622\|ref\|ZP_00701889.1\| COG0454: Histone acetyltransferase HPA2 and related acetyltransferase...	4.0E-84	[17..329]	[1..313]
gi\|110616974, gi... - gi\|110807426\|ref\|YP_690946.1\| putative acetyltransferase [Shigella flexneri 5 str. 8401], gi\|1106169...	4.0E-84	[17..329]	[1..313]
gi\|75258130 - gi\|75258130\|ref\|ZP_00729591.1\| COG0454: Histone acetyltransferase HPA2 and related acetyltransferase... gi\|194428683, gi... - gi\|75210094\|ref\|ZP_00710273.1\| COG0454: Histone acetyltransferase HPA2 and related acetyltransferase...	7.0E-84	[17..329]	[1..313]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQLPAWPRI TRESTAMYHL RVPQTEEELE RYYQFRWEML RKPLHQPKGS ERDGWDALAH  60
   61 HQMVVDEEGN LVAVGRLYIN ADNEASIRFM AVHPSVQDKG LGTLMAMTLE SVARQEGVKR 120
  121 VTCSAREDAV EFFAKLGFVN QGEITTPTTT PIRHFLMIKP VA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.30103
Match:	1yr0A
Description:	Crystal structure of phosphinothricin acetyltransferase from agrobacterium tumefaciens
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.97933499002461	bayes_pls_golite062009
transferase activity	1.65122603541695	bayes_pls_golite062009
transferase activity, transferring acyl groups	1.42711272311757	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	1.24328242407788	bayes_pls_golite062009
acyltransferase activity	1.2338745976101	bayes_pls_golite062009
N-acyltransferase activity	0.890897647236405	bayes_pls_golite062009
acetyltransferase activity	0.823367673029436	bayes_pls_golite062009
N-acetyltransferase activity	0.498634717186713	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [163-329]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLDDILHRGD WCGQLQQAWY EHIPLSEKMG VRIQQYTGQK FITTMPETGN QNPHHTVFAG  60
   61 SLFSLATLTG WGLIWLMLRE RHLGGTIILA DAHIRYSKPI SGKPNAVADL GSLSGDLDRL 120
  121 ARGKKARVQL QVELLGGETA GAIFEGIYIV LPAKPFGPYE EGGNEEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.0
Match:	1t82A
Description:	Crystal Structure of the putative thioesterase from Shewanella oneidensis, Northeast Structural Genomics Target SoR51
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.74605540351792	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: