YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213427762
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E02-1180
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213427762.

Description	E-value	Query Range	Subject Range
NUDI_SALTY - Nucleoside triphosphatase nudI OS=Salmonella typhimurium GN=nudI PE=3 SV=1 NUDI_SALPB - Nucleoside triphosphatase nudI OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=nudI PE=3 ... lcl\|NC_016856.1_... - [gene=yfaO] [protein=putative NTP pyrophosphohydrolase] [protein_id=YP_005238368.1] [location=245415... NUDI_SALPB - Nucleoside triphosphatase NudI OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=nudI PE=3 ... gi\|197240627, gi... - gi\|197262372\|ref\|ZP_03162446.1\| hydrolase, nudix family [Salmonella enterica subsp. enterica serovar... NUDI_SALTY - Nucleoside triphosphatase nudI OS=Salmonella typhimurium GN=nudI PE=1 SV=1 NUDI_SALDC - Nucleoside triphosphatase NudI OS=Salmonella dublin (strain CT_02021853) GN=nudI PE=3 SV=1 NUDI_SALTY - Nucleoside triphosphatase NudI OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=nu...	2.0E-24	[1..141]	[1..141]
gi\|13362609, gi\|... - gi\|15832393\|ref\|NP_311166.1\| hypothetical protein ECs3139 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|254794146, gi... - gi\|254794146\|ref\|YP_003078983.1\| hypothetical protein ECSP_3128 [Escherichia coli O157:H7 str. TW143... gi\|209765388, gi... - pir\|\|B85865 hypothetical protein yfaO [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15802800, gi\|... - gi\|15802800\|ref\|NP_288827.1\| hypothetical protein Z3509 [Escherichia coli O157:H7 EDL933], gi\|125165... NUDI_ECO57 - Nucleoside triphosphatase NudI OS=Escherichia coli O157:H7 GN=nudI PE=3 SV=1 gi\|195935630 - gi\|195935630\|ref\|ZP_03081012.1\| hypothetical protein EscherichcoliO157_04087 [Escherichia coli O157:... NUDI_ECO7I - Nucleoside triphosphatase NudI OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=nudI PE=3 SV=1	2.0E-24	[1..141]	[1..141]
NUDI_ECOL5 - Nucleoside triphosphatase NudI OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=nudI PE=3 SV=1 NUDI_ECOL6 - Nucleoside triphosphatase NudI OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=nud... NUDI_ECOL6 - Nucleoside triphosphatase nudI OS=Escherichia coli O6 GN=nudI PE=3 SV=1 NUDI_ECO81 - Nucleoside triphosphatase NudI OS=Escherichia coli O81 (strain ED1a) GN=nudI PE=3 SV=1	3.0E-24	[1..141]	[1..141]
NUDI_ECOHS - Nucleoside triphosphatase NudI OS=Escherichia coli O9:H4 (strain HS) GN=nudI PE=3 SV=1 sp\|B7UFR3\|NUDI_ECO27 - Nucleoside triphosphatase nudI OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=nudI PE=3 SV=... NUDI_ECOUT - Nucleoside triphosphatase NudI OS=Escherichia coli (strain UTI89 / UPEC) GN=nudI PE=3 SV=1 NUDI_ECO27 - Nucleoside triphosphatase NudI OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=nudI PE=3 SV=... NUDI_ECOSM - Nucleoside triphosphatase NudI OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=nudI PE=3 SV=2 NUDI_ECO45 - Nucleoside triphosphatase NudI OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=nudI PE=3 SV=1 gi\|226901095, gi... - gi\|237704729\|ref\|ZP_04535210.1\| nucleoside triphosphatase nudI [Escherichia sp. 3_2_53FAA], gi\|22690... NUDI_ECOK1 - Nucleoside triphosphatase NudI OS=Escherichia coli O1:K1 / APEC GN=nudI PE=3 SV=1	3.0E-24	[1..141]	[1..141]
gi\|1799603, gi\|8... - gi\|89109068\|ref\|AP_002848.1\| predicted NUDIX hydrolase [Escherichia coli str. K-12 substr. W3110], g... gi\|188488527, gi... - gi\|188493328\|ref\|ZP_03000598.1\| hydrolase, NUDIX family [Escherichia coli 53638], gi\|188488527\|gb\|ED... EG13275 - nucleoside triphosphatase / Nucleoside triphosphatase, pyrimidine dNTPs preferred gi\|251785612, gi... - gi\|251785612\|ref\|YP_002999916.1\| hypothetical protein B21_02136 [Escherichia coli BL21], gi\|24237788... NUDI_ECOLC - Nucleoside triphosphatase NudI OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=nudI PE... NUDI_ECOBW - Nucleoside triphosphatase NudI OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=nudI PE=3 SV=1 YFAO_ECOLI - Putative Nudix hydrolase yfaO (EC 3.6.-.-) - Escherichia coli gi\|124501891, gi... - gi\|124526420\|ref\|ZP_01698373.1\| NUDIX hydrolase [Escherichia coli B], gi\|124501891\|gb\|EAY49352.1\| NU... gi\|253974163, gi... - gi\|254162262\|ref\|YP_003045370.1\| predicted NUDIX hydrolase [Escherichia coli B str. REL606], gi\|2539... NUDI_ECODH - Nucleoside triphosphatase NudI OS=Escherichia coli (strain K12 / DH10B) GN=nudI PE=3 SV=1 gi\|253772825, gi... - gi\|254289023\|ref\|YP_003054771.1\| predicted NUDIX hydrolase [Escherichia coli BL21(DE3)], gi\|25397833... EG13275 - nucleoside triphosphatase / Nucleoside triphosphatase, pyrimidine dNTPs preferred	4.0E-24	[1..141]	[1..141]
NUDI_SALCH - Nucleoside triphosphatase NudI OS=Salmonella choleraesuis (strain SC-B67) GN=nudI PE=3 SV=1 NUDI_SALCH - Nucleoside triphosphatase nudI OS=Salmonella choleraesuis GN=nudI PE=3 SV=1 NUDI_SALCH - Nucleoside triphosphatase nudI OS=Salmonella choleraesuis GN=nudI PE=3 SV=1	5.0E-24	[1..141]	[1..141]
gi\|110806218, gi... - gi\|110806218\|ref\|YP_689738.1\| hypothetical protein SFV_2321 [Shigella flexneri 5 str. 8401], gi\|1106...	7.0E-24	[1..141]	[29..169]
NUDI_SHIF8 - Nucleoside triphosphatase NudI OS=Shigella flexneri serotype 5b (strain 8401) GN=nudI PE=3 SV=2 NUDI_ECO24 - Nucleoside triphosphatase NudI OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=nudI PE=3 SV=... NUDI_SHISS - Nucleoside triphosphatase NudI OS=Shigella sonnei (strain Ss046) GN=nudI PE=3 SV=1 NUDI_ECO55 - Nucleoside triphosphatase NudI OS=Escherichia coli (strain 55989 / EAEC) GN=nudI PE=3 SV=1 NUDI_ECO8A - Nucleoside triphosphatase NudI OS=Escherichia coli O8 (strain IAI1) GN=nudI PE=3 SV=1 NUDI_ECOSE - Nucleoside triphosphatase NudI OS=Escherichia coli (strain SE11) GN=nudI PE=3 SV=1 NUDI_SHIFL - Nucleoside triphosphatase NudI OS=Shigella flexneri GN=nudI PE=3 SV=5	8.0E-24	[1..141]	[1..141]
ADPP_METJA - ADP-ribose pyrophosphatase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / ... ADPP_METJA - ADP-ribose pyrophosphatase OS=Methanocaldococcus jannaschii GN=nudF PE=1 SV=1	3.0E-22	[2..138]	[39..163]
gi\|86738854, gi\|... - gi\|86738854\|ref\|YP_479254.1\| NUDIX hydrolase [Frankia sp. CcI3], gi\|86565716\|gb\|ABD09525.1\| NUDIX hy...	4.0E-22	[4..138]	[20..146]

Back

Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQRTIVCPL IQNDGCYLLC KMADNRGVFP GQWALSGGGV EPGERIEEAL RREIREELGE  60
   61 QLILSDITPW TFRDDIRVKT YADGRQEEIY MIYLIFDCVS ANRDICINDE FQDYAWVKPE 120
  121 ELALYDLNVA TRHTLALKGL L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.69897
Match:	2pbtA
Description:	No description for 2pbtA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits