YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213426170
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E02-1180
Length:	205 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213426170.

Description	E-value	Query Range	Subject Range
KITH_SALCH - Thymidine kinase OS=Salmonella choleraesuis GN=tdk PE=3 SV=1 gi\|224583758, gi... - gi\|224583758\|ref\|YP_002637556.1\| thymidine kinase [Salmonella enterica subsp. enterica serovar Parat... KITH_SALCH - Thymidine kinase OS=Salmonella choleraesuis (strain SC-B67) GN=tdk PE=3 SV=1 KITH_SALCH - Thymidine kinase OS=Salmonella choleraesuis GN=tdk PE=3 SV=1	6.0E-85	[1..205]	[1..205]
gi\|1246361 - gi\|1246361\|gb\|AAA93511.1\| thymidine:thymidylate kinase:zeocin resistance fusion protein [Cloning vec...	2.0E-84	[1..204]	[1..204]
gi\|218558166, gi... - gi\|218558166\|ref\|YP_002391079.1\| thymidine kinase [Escherichia coli S88], gi\|218364935\|emb\|CAR02631.... gi\|215264546, gi... - gi\|215486474\|ref\|YP_002328905.1\| thymidine kinase [Escherichia coli O127:H6 str. E2348/69], gi\|21526... gi\|227836537, gi... - gi\|227886333\|ref\|ZP_04004138.1\| thymidine kinase [Escherichia coli 83972], gi\|227836537\|gb\|EEJ47003.... gi\|218704761, gi... - gi\|218704761\|ref\|YP_002412280.1\| thymidine kinase [Escherichia coli UMN026], gi\|218431858\|emb\|CAR127... gi\|237705202, gi... - gi\|237705202\|ref\|ZP_04535683.1\| thymidine kinase/deoxyuridine kinase [Escherichia sp. 3_2_53FAA], gi... gi\|218699944, gi... - gi\|218699944\|ref\|YP_002407573.1\| thymidine kinase [Escherichia coli IAI39], gi\|218369930\|emb\|CAR1770... KITH_ECOL6 - Thymidine kinase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=tdk PE=3 SV=1 gi\|170680630, gi... - gi\|170680630\|ref\|YP_001743956.1\| thymidine kinase [Escherichia coli SMS-3-5], gi\|170518348\|gb\|ACB165... KITH_ECOL6 - Thymidine kinase OS=Escherichia coli O6 GN=tdk PE=3 SV=1 gi\|91210461, gi\|... - gi\|91210461\|ref\|YP_540447.1\| thymidine kinase [Escherichia coli UTI89], gi\|91072035\|gb\|ABE06916.1\| t... gi\|117623453, gi... - gi\|117623453\|ref\|YP_852366.1\| thymidine kinase [Escherichia coli APEC O1], gi\|115512577\|gb\|ABJ00652.... gi\|75242039, gi\|... - gi\|75242039\|ref\|ZP_00725833.1\| COG1435: Thymidine kinase [Escherichia coli F11], gi\|191171003\|ref\|ZP... gi\|110641467, gi... - gi\|110641467\|ref\|YP_669197.1\| thymidine kinase [Escherichia coli 536], gi\|110343059\|gb\|ABG69296.1\| t...	1.0E-83	[1..204]	[1..204]
KITH_SHIDS - Thymidine kinase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=tdk PE=3 SV=1	2.0E-83	[1..204]	[1..204]
gi\|168771128, gi... - gi\|189360095\|gb\|EDU78514.1\| thymidine kinase [Escherichia coli O157:H7 str. EC4486], gi\|168771128\|re... gi\|168776869, gi... - gi\|187767777\|gb\|EDU31621.1\| thymidine kinase [Escherichia coli O157:H7 str. EC4196], gi\|168776869\|re... gi\|168784150, gi... - gi\|188998625\|gb\|EDU67611.1\| thymidine kinase [Escherichia coli O157:H7 str. EC4076], gi\|168784150\|re... gi\|168787743, gi... - gi\|189372534\|gb\|EDU90950.1\| thymidine kinase [Escherichia coli O157:H7 str. EC869], gi\|168787743\|ref... gi\|189376322, gi... - gi\|189376322\|gb\|EDU94738.1\| thymidine kinase [Escherichia coli O157:H7 str. EC508], gi\|168801552\|ref... gi\|195939125 - gi\|195939125\|ref\|ZP_03084507.1\| thymidine kinase [Escherichia coli O157:H7 str. EC4024] gi\|208807977, gi... - gi\|208807977\|ref\|ZP_03250314.1\| thymidine kinase [Escherichia coli O157:H7 str. EC4206], gi\|20872777... gi\|208815997, gi... - gi\|208815997\|ref\|ZP_03257176.1\| thymidine kinase [Escherichia coli O157:H7 str. EC4045], gi\|20873264... gi\|168750800, gi... - gi\|188015091\|gb\|EDU53213.1\| thymidine kinase [Escherichia coli O157:H7 str. EC4113], gi\|168750800\|re... gi\|168758164, gi... - gi\|189354963\|gb\|EDU73382.1\| thymidine kinase [Escherichia coli O157:H7 str. EC4401], gi\|168758164\|re... gi\|189365630, gi... - gi\|189365630\|gb\|EDU84046.1\| thymidine kinase [Escherichia coli O157:H7 str. EC4501], gi\|168764355\|re... gi\|254592108, gi... - gi\|254792708\|ref\|YP_003077545.1\| thymidine kinase/deoxyuridine kinase [Escherichia coli O157:H7 str.... KITH_ECO57 - Thymidine kinase OS=Escherichia coli O157:H7 GN=tdk PE=3 SV=1 gi\|208737875, gi... - gi\|208822390\|ref\|ZP_03262709.1\| thymidine kinase [Escherichia coli O157:H7 str. EC4042], gi\|20873787... gi\|209160036, gi... - gi\|209398636\|ref\|YP_002270170.1\| thymidine kinase [Escherichia coli O157:H7 str. EC4115], gi\|2091600... gi\|209918479, gi... - gi\|209918479\|ref\|YP_002292563.1\| thymidine kinase [Escherichia coli SE11], gi\|209911738\|dbj\|BAG76812... gi\|217318723, gi... - gi\|217328296\|ref\|ZP_03444378.1\| thymidine kinase [Escherichia coli O157:H7 str. TW14588], gi\|2173187... gi\|218553790, gi... - gi\|218553790\|ref\|YP_002386703.1\| thymidine kinase [Escherichia coli IAI1], gi\|218360558\|emb\|CAQ98117... gi\|218351483, gi... - gi\|218694751\|ref\|YP_002402418.1\| thymidine kinase [Escherichia coli 55989], gi\|218351483\|emb\|CAU9719... KITH_SHISS - Thymidine kinase OS=Shigella sonnei (strain Ss046) GN=tdk PE=3 SV=1 gi\|192927546, gi... - gi\|75257143\|ref\|ZP_00728679.1\| COG1435: Thymidine kinase [Escherichia coli E22], gi\|193064861\|ref\|ZP... gi\|192956719, gi... - gi\|75235254\|ref\|ZP_00719491.1\| COG1435: Thymidine kinase [Escherichia coli E110019], gi\|193069966\|re... gi\|75230204, gi\|... - gi\|75230204\|ref\|ZP_00716705.1\| COG1435: Thymidine kinase [Escherichia coli B7A], gi\|191166660\|ref\|ZP... KITH_SHIBS - Thymidine kinase OS=Shigella boydii serotype 4 (strain Sb227) GN=tdk PE=3 SV=1 gi\|194416051, gi... - gi\|75212671\|ref\|ZP_00712669.1\| COG1435: Thymidine kinase [Escherichia coli B171], gi\|194425996\|ref\|Z... gi\|157159009, gi... - gi\|75190288\|ref\|ZP_00703555.1\| COG1435: Thymidine kinase [Escherichia coli E24377A], gi\|157159009\|re... gi\|30062758, gi\|... - gi\|30062758\|ref\|NP_836929.1\| thymidine kinase [Shigella flexneri 2a str. 2457T], gi\|30041006\|gb\|AAP1... gi\|25287021, gi\|... - gi\|4867939\|dbj\|BAA77748.1\| thymidine kinase [Escherichia coli], pir\|\|D90846 thymidine kinase (EC 2.7... gi\|24051542, gi\|... - gi\|24112634\|ref\|NP_707144.1\| thymidine kinase [Shigella flexneri 2a str. 301], gi\|24051542\|gb\|AAN428... gi\|13361205, gi\|... - gi\|15830994\|ref\|NP_309767.1\| thymidine kinase [Escherichia coli O157:H7 str. Sakai], gi\|13361205\|dbj... gi\|110805241, gi... - gi\|110805241\|ref\|YP_688761.1\| thymidine kinase [Shigella flexneri 5 str. 8401], gi\|110614789\|gb\|ABF0... KITH_SHIFL - Thymidine kinase OS=Shigella flexneri GN=tdk PE=3 SV=1	2.0E-83	[1..204]	[1..204]
gi\|254288127, gi... - gi\|254288127\|ref\|YP_003053875.1\| thymidine kinase [Escherichia coli BL21(DE3)], gi\|253977434\|gb\|ACT4... gi\|75195387, gi\|... - gi\|75195387\|ref\|ZP_00705457.1\| COG1435: Thymidine kinase [Escherichia coli HS], gi\|157160745\|ref\|YP_... gi\|251784744, gi... - gi\|251784744\|ref\|YP_002999048.1\| hypothetical protein B21_01224 [Escherichia coli BL21], gi\|24237701... gi\|194436990, gi... - gi\|83587378\|ref\|ZP_00926006.1\| COG1435: Thymidine kinase [Escherichia coli 101-1], gi\|194436990\|ref\|... gi\|254161319, gi... - gi\|254161319\|ref\|YP_003044427.1\| thymidine kinase [Escherichia coli B str. REL606], gi\|253973220\|gb\|...	2.0E-83	[1..204]	[1..204]
KITH_ECOLI - Thymidine kinase (EC 2.7.1.21) - Escherichia coli EG10994 - thymidine kinase /deoxyuridine kinase / Deoxythymidine kinase gi\|238863658, gi... - gi\|238900471\|ref\|YP_002926267.1\| thymidine kinase/deoxyuridine kinase [Escherichia coli BW2952], gi\|... gi\|89108084, gi\|... - gi\|89108084\|ref\|AP_001864.1\| thymidine kinase/deoxyuridine kinase [Escherichia coli str. K-12 substr... gi\|170080867, gi... - gi\|170080867\|ref\|YP_001730187.1\| thymidine kinase/deoxyuridine kinase [Escherichia coli str. K-12 su... gi\|188490967, gi... - gi\|75511732\|ref\|ZP_00734361.1\| COG1435: Thymidine kinase [Escherichia coli 53638], gi\|188495768\|ref\|... EG10994 - thymidine kinase /deoxyuridine kinase / Deoxythymidine kinase	6.0E-83	[1..204]	[1..204]
gi\|25287020 - gi\|25287020\|pir\|\|C85704 thymidine kinase (EC 2.7.1.21) [similarity] - Escherichia coli (strain O157:... gi\|12514959, gi\|... - gi\|15801466\|ref\|NP_287483.1\| thymidine kinase [Escherichia coli O157:H7 EDL933], gi\|12514959\|gb\|AAG5...	8.0E-83	[1..204]	[1..204]
gi\|39939251 - gi\|39939251\|gb\|AAR32708.1\| thymidine kinase [Xenorhabdus nematophila]	2.0E-80	[1..198]	[1..198]
gi\|238718765, gi... - gi\|77960742\|ref\|ZP_00824600.1\| COG1435: Thymidine kinase [Yersinia mollaretii ATCC 43969], gi\|238797...	2.0E-79	[1..193]	[1..193]

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Predicted Domain #1

Region A:
Residues: [1-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQLYFYYSA MNAGKSTALL QSSYNYQERG MRTVVYTAEI DDRFGAGKVS SRIGLSSPAK  60
   61 LFNQNTSLFE EIRAESARQT IHCVLVDESQ FLTRQQVYQL SEVVDKLDIP VLCYGLRTDF 120
  121 RGELFVGSQY LLAWSDKLVE LKTICFCGRK ASMVLRLDQD GRPYNEGEQV VIGGNERYVS 180
  181 VCRKHYKDAL EEGSLTAIQE RHRHI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.522879
Match:	2ja1A
Description:	No description for 2ja1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits