YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213161346
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E00-7866
Length:	79 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213161346.

Description	E-value	Query Range	Subject Range
gi\|16420384, gi\|... - gi\|16765192\|ref\|NP_460807.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16420384\|... gi\|207856643, gi... - gi\|207856643\|ref\|YP_002243294.1\| hypothetical protein SEN1186 [Salmonella enterica subsp. enterica s... gi\|198244523, gi... - gi\|198244523\|ref\|YP_002215289.1\| hypothetical protein SeD_A1463 [Salmonella enterica subsp. enterica... gi\|205272267, gi... - gi\|205352486\|ref\|YP_002226287.1\| hypothetical protein SG1265 [Salmonella enterica subsp. enterica se... gi\|197214181, gi... - gi\|197250478\|ref\|YP_002146174.1\| hypothetical protein SeAg_B1280 [Salmonella enterica subsp. enteric... gi\|197243937, gi... - gi\|197265682\|ref\|ZP_03165756.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|195634271, gi... - gi\|195634271\|gb\|EDX52623.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ne... gi\|194407496, gi... - gi\|194449192\|ref\|YP_002045897.1\| hypothetical protein SeHA_C2053 [Salmonella enterica subsp. enteric... gi\|167993805, gi... - gi\|205328188\|gb\|EDZ14952.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar 4,... lcl\|NC_016856.1_... - [gene=STM14_2239] [protein=putative cytoplasmic protein] [protein_id=YP_005237798.1] [location=19615... gi\|205339443, gi... - gi\|205339443\|gb\|EDZ26207.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar He... gi\|161362997, gi... - gi\|161613633\|ref\|YP_001587598.1\| hypothetical protein SPAB_01357 [Salmonella enterica subsp. enteric...	162.0	[0..1]	[79..1]
EG14024 - uncharacterized protein / Function unknown gi\|110343546, gi... - gi\|110641954\|ref\|YP_669684.1\| hypothetical protein ECP_1780 [Escherichia coli 536], gi\|110343546\|gb\|... gi\|189372075, gi... - gi\|189372075\|gb\|EDU90491.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|110805370, gi... - gi\|110805370\|ref\|YP_688890.1\| hypothetical protein SFV_1392 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|188999450, gi... - gi\|188999450\|gb\|EDU68436.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|187767053, gi... - gi\|187767053\|gb\|EDU30897.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168770816, gi... - gi\|189360265\|gb\|EDU78684.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|188487261, gi... - gi\|188492062\|ref\|ZP_02999332.1\| conserved hypothetical protein [Escherichia coli 53638], gi\|18848726... gi\|170520553, gi... - gi\|170682835\|ref\|YP_001743409.1\| hypothetical protein EcSMS35_1351 [Escherichia coli SMS-3-5], gi\|17... gi\|170081492, gi... - gi\|170081492\|ref\|YP_001730812.1\| hypothetical protein ECDH10B_1975 [Escherichia coli str. K-12 subst... gi\|251785284, gi... - gi\|251785284\|ref\|YP_002999588.1\| hypothetical protein B21_01795 [Escherichia coli BL21], gi\|24237755... gi\|189375612, gi... - gi\|189375612\|gb\|EDU94028.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|238901051, gi... - gi\|238901051\|ref\|YP_002926847.1\| hypothetical protein BWG_1650 [Escherichia coli BW2952], gi\|2388629... gi\|253973797, gi... - gi\|254161896\|ref\|YP_003045004.1\| hypothetical protein ECB_01807 [Escherichia coli B str. REL606], gi... gi\|253773209, gi... - gi\|254288684\|ref\|YP_003054432.1\| hypothetical protein ECD_01807 [Escherichia coli BL21(DE3)], gi\|253... gi\|254793460, gi... - gi\|254793460\|ref\|YP_003078297.1\| hypothetical protein ECSP_2410 [Escherichia coli O157:H7 str. TW143... gi\|189367362, gi... - gi\|189367362\|gb\|EDU85778.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189354636, gi... - gi\|189354636\|gb\|EDU73055.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|188013975, gi... - gi\|188013975\|gb\|EDU52097.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|217318258, gi... - gi\|217328911\|ref\|ZP_03444992.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|215265121, gi... - gi\|215487049\|ref\|YP_002329480.1\| hypothetical protein E2348C_1961 [Escherichia coli O127:H6 str. E23... gi\|56479887, gi\|... - gi\|56479887\|ref\|NP_707284.2\| hypothetical protein SF1389 [Shigella flexneri 2a str. 301], gi\|5638343... gi\|209158059, gi... - gi\|209396659\|ref\|YP_002270918.1\| hypothetical protein ECH74115_2569 [Escherichia coli O157:H7 str. E... gi\|85675141, gi\|... - gi\|89108676\|ref\|AP_002456.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|208739211, gi... - gi\|208819088\|ref\|ZP_03259408.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|218352134, gi... - gi\|218695402\|ref\|YP_002403069.1\| hypothetical protein EC55989_2013 [Escherichia coli 55989], gi\|2183... gi\|218689773, gi... - gi\|218689773\|ref\|YP_002397985.1\| hypothetical protein ECED1_2040 [Escherichia coli ED1a], gi\|2184273... gi\|218365468, gi... - gi\|218558699\|ref\|YP_002391612.1\| hypothetical protein ECS88_1889 [Escherichia coli S88], gi\|21836546... gi\|218361178, gi... - gi\|218554410\|ref\|YP_002387323.1\| hypothetical protein ECIAI1_1907 [Escherichia coli IAI1], gi\|218361... YEBV_ECOL6 - Uncharacterized protein YebV OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yebV ... YEBV_SHIFL - Uncharacterized protein YebV OS=Shigella flexneri GN=yebV PE=4 SV=1 gi\|194429671, gi... - gi\|194429671\|ref\|ZP_03062189.1\| conserved hypothetical protein [Escherichia coli B171], gi\|194412313... YEBV_ECOLI - Hypothetical protein yebV - Escherichia coli gi\|193069883, gi... - gi\|193069883\|ref\|ZP_03050832.1\| conserved hypothetical protein [Escherichia coli E110019], gi\|192956... gi\|191173044, gi... - gi\|191173044\|ref\|ZP_03034578.1\| conserved hypothetical protein [Escherichia coli F11], gi\|190906755\|... gi\|191168515, gi... - gi\|191168515\|ref\|ZP_03030302.1\| conserved hypothetical protein [Escherichia coli B7A], gi\|190901468\|... gi\|208731154, gi... - gi\|208816811\|ref\|ZP_03257931.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208810316, gi... - gi\|208810316\|ref\|ZP_03252192.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... YEBV_ECOL6 - Uncharacterized protein yebV OS=Escherichia coli O6 GN=yebV PE=4 SV=1 gi\|195939737 - gi\|195939737\|ref\|ZP_03085119.1\| hypothetical protein EscherichcoliO157_25600 [Escherichia coli O157:... gi\|194439078, gi... - gi\|194439078\|ref\|ZP_03071161.1\| conserved hypothetical protein [Escherichia coli 101-1], gi\|19442203... gi\|30041159, gi\|... - gi\|30062910\|ref\|NP_837081.1\| hypothetical protein S1505 [Shigella flexneri 2a str. 2457T], gi\|300411... EG14024 - uncharacterized protein / Function unknown gi\|218705335, gi... - gi\|218705335\|ref\|YP_002412854.1\| hypothetical protein ECUMN_2130 [Escherichia coli UMN026], gi\|21843... gi\|218369579, gi... - gi\|218699593\|ref\|YP_002407222.1\| hypothetical protein ECIAI39_1214 [Escherichia coli IAI39], gi\|2183... gi\|157081240, gi... - gi\|157159210\|ref\|YP_001463138.1\| hypothetical protein EcE24377A_2065 [Escherichia coli E24377A], gi\|...	156.0	[0..2]	[79..1]
gi\|26248099, gi\|... - gi\|26248099\|ref\|NP_754139.1\| hypothetical protein c2245 [Escherichia coli CFT073], gi\|26108502\|gb\|AA... gi\|75239743 - gi\|75239743\|ref\|ZP_00723706.1\| hypothetical protein EcolF_01002941 [Escherichia coli F11] gi\|24112774, gi\|... - ref\|NP_707284.1\| hypothetical protein SF1389 [Shigella flexneri 2a str. 301], gb\|AAN42991.1\| orf, c... gi\|75511131 - gi\|75511131\|ref\|ZP_00733854.1\| hypothetical protein Ecol5_01004542 [Escherichia coli 53638] gi\|49176158, gi\|... - gi\|49176158\|ref\|NP_416350.3\| unknown CDS [Escherichia coli K12], gb\|AAC74906.1\| orf, hypothetical pr... gi\|81241377, gi\|... - gi\|82777229\|ref\|YP_403578.1\| hypothetical protein SDY_1987 [Shigella dysenteriae Sd197], gi\|81241377... gi\|15831800, gi\|... - gi\|15831800\|ref\|NP_310573.1\| hypothetical protein ECs2546 [Escherichia coli O157:H7], gi\|13362014\|db... gi\|82543760, gi\|... - gi\|82543760\|ref\|YP_407707.1\| hypothetical protein SBO_1251 [Shigella boydii Sb227], gi\|81245171\|gb\|A... gi\|15802249, gi\|... - gi\|15802249\|ref\|NP_288273.1\| hypothetical protein Z2883 [Escherichia coli O157:H7 EDL933], gi\|125158... gi\|83585563 - gi\|83585563\|ref\|ZP_00924207.1\| hypothetical protein Ecol1_01003293 [Escherichia coli 101-1] gi\|75190865 - gi\|75190865\|ref\|ZP_00704132.1\| hypothetical protein EcolE_01004178 [Escherichia coli E24377A] gi\|75209118 - gi\|75209118\|ref\|ZP_00709373.1\| hypothetical protein EcolB_01003724 [Escherichia coli B171] gi\|75228310 - gi\|75228310\|ref\|ZP_00714962.1\| hypothetical protein EcolB7_01003388 [Escherichia coli B7A] gi\|75235360 - gi\|75235360\|ref\|ZP_00719586.1\| hypothetical protein EcolE1_01002913 [Escherichia coli E110019] gi\|91072632, gi\|... - gi\|91211058\|ref\|YP_541044.1\| hypothetical protein UTI89_C2037 [Escherichia coli UTI89], gi\|91072632\|... gi\|15831800, gi\|... - gi\|15831800\|ref\|NP_310573.1\| hypothetical protein ECs2546 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|209767722, gi... - pir\|\|D64945 hypothetical protein b1836 - Escherichia coli (strain K-12), pir\|\|F85795 hypothetical p... gi\|209919202, gi... - gi\|209919202\|ref\|YP_002293286.1\| hypothetical protein ECSE_2011 [Escherichia coli SE11], gi\|20991246... gi\|237705788, gi... - gi\|237705788\|ref\|ZP_04536269.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|227837310, gi... - gi\|227885737\|ref\|ZP_04003542.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783731...	156.0	[0..2]	[79..6]
gi\|75195901 - gi\|75195901\|ref\|ZP_00705971.1\| hypothetical protein EcolH_01001704 [Escherichia coli HS]	155.0	[0..2]	[79..6]
gi\|75255851 - gi\|75255851\|ref\|ZP_00727590.1\| hypothetical protein EcolE2_01004118 [Escherichia coli E22]	152.0	[0..2]	[79..6]
gi\|75175665 - gi\|75175665\|ref\|ZP_00695871.1\| hypothetical protein SboyB_01004261 [Shigella boydii BS512]	152.0	[0..2]	[79..6]
gi\|218928822, gi... - gi\|218928822\|ref\|YP_002346697.1\| hypothetical protein YPO1694 [Yersinia pestis CO92], gi\|16121954\|re... gi\|167422612, gi... - gi\|167422612\|ref\|ZP_02314365.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|51589992, gi\|... - gi\|51596710\|ref\|YP_070901.1\| hypothetical protein YPTB2387 [Yersinia pseudotuberculosis IP 32953], g... gi\|167048851, gi... - gi\|167401746\|ref\|ZP_02307237.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167468747 - gi\|167468747\|ref\|ZP_02333451.1\| hypothetical protein YpesF_12794 [Yersinia pestis FV-1] gi\|167054237, gi... - gi\|167426784\|ref\|ZP_02318537.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|186895768, gi... - gi\|186895768\|ref\|YP_001872880.1\| hypothetical protein YPTS_2462 [Yersinia pseudotuberculosis PB1/+],... gi\|229689415, gi... - gi\|229843807\|ref\|ZP_04463950.1\| hypothetical protein YPF_2203 [Yersinia pestis biovar Orientalis str... gi\|229702411, gi... - gi\|229894656\|ref\|ZP_04509837.1\| hypothetical protein YPS_2432 [Yersinia pestis Pestoides A], gi\|2297... gi\|229693403, gi... - gi\|229897066\|ref\|ZP_04512222.1\| hypothetical protein YPH_4081 [Yersinia pestis biovar Orientalis str... gi\|149290725, gi... - gi\|149366351\|ref\|ZP_01888385.1\| hypothetical protein YPE_1568 [Yersinia pestis CA88-4125], gi\|149290... gi\|165913634, gi... - gi\|89102893\|ref\|ZP_01175497.1\| COG1855: ATPase (PilT family) [Yersinia pestis biovar Orientalis str.... gi\|145210732, gi... - gi\|145599036\|ref\|YP_001163112.1\| hypothetical protein YPDSF_1754 [Yersinia pestis Pestoides F], gi\|1... gi\|165925552, gi... - gi\|165925552\|ref\|ZP_02221384.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|108779735, gi... - gi\|108807822\|ref\|YP_651738.1\| hypothetical protein YPA_1827 [Yersinia pestis Antiqua], gi\|108779735\|... gi\|108775746, gi... - gi\|229902418\|ref\|ZP_04517537.1\| hypothetical protein YP516_2155 [Yersinia pestis Nepal516], gi\|22968... gi\|166210458, gi... - gi\|166210458\|ref\|ZP_02236493.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|165992609, gi... - gi\|166008227\|ref\|ZP_02229125.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... Q669U6\|Q669U6_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|25510358 - pir\|\|AF0206 conserved hypothetical protein YPO1694 [imported] - Yersinia pestis (strain CO92) gi\|162420031, gi... - gi\|77635512\|ref\|ZP_00797595.1\| COG1855: ATPase (PilT family) [Yersinia pestis Angola], gi\|162420031\|... gi\|45436392, gi\|... - gi\|45441531\|ref\|NP_993070.1\| hypothetical protein YP_1719 [Yersinia pestis biovar Microtus str. 9100... gi\|117673318, gi... - gi\|77629456\|ref\|ZP_00792042.1\| COG1855: ATPase (PilT family) [Yersinia pseudotuberculosis IP 31758],... gi\|22125749, gi\|... - gi\|22125749\|ref\|NP_669172.1\| hypothetical protein y1856 [Yersinia pestis KIM], gi\|21958670\|gb\|AAM854...	144.0	[0..1]	[78..1]
gi\|83569077 - gi\|83569077\|ref\|ZP_00920538.1\| hypothetical protein Sdys1_01002683 [Shigella dysenteriae 1012]	143.0	[0..2]	[79..6]
gi\|36786008, gi\|... - gi\|37526576\|ref\|NP_929920.1\| hypothetical protein plu2685 [Photorhabdus luminescens subsp. laumondii...	137.0	[0..1]	[78..1]
gi\|77980092, gi\|... - gi\|77980092\|ref\|ZP_00835507.1\| hypothetical protein YintA_01000141 [Yersinia intermedia ATCC 29909],...	135.0	[0..1]	[78..1]

Back

Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKTSVRIGA FEIDDAELHG ESPGERTLTI PCKSDPDLCM QLDAWDAETS VPAILNGEHS  60
   61 VLFRNHYDPK SDAWVMRLA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	61.721246
Match:	PF07351.4
Description:	No description for PF07351.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits