YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|224468807, gi...
Organism:	Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594
Length:	85 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|224468807, gi....

Description	E-value	Query Range	Subject Range
gi\|62127367, gi\|... - gi\|62179734\|ref\|YP_216151.1\| putative outer membrane protein [Salmonella enterica subsp. enterica se...	2.0E-22	[1..85]	[23..107]
gi\|56413801, gi\|... - gi\|56413801\|ref\|YP_150876.1\| putative secreted protein [Salmonella enterica subsp. enterica serovar ... gi\|238910966 - gi\|238910966\|ref\|ZP_04654803.1\| putative secreted protein [Salmonella enterica subsp. enterica serov... lcl\|NC_016856.1_... - [gene=ycfR] [protein=putative outer membrane protein] [protein_id=YP_005236971.1] [location=1255591.... gi\|16419732, gi\|... - gi\|16764569\|ref\|NP_460184.1\| putative outer membrane protein [Salmonella typhimurium LT2], gi\|164197... gi\|197362724, gi... - gi\|197362724\|ref\|YP_002142361.1\| putative secreted protein [Salmonella enterica subsp. enterica sero... gi\|197251779, gi... - gi\|197251779\|ref\|YP_002146828.1\| protein YcfR [Salmonella enterica subsp. enterica serovar Agona str... gi\|197261893, gi... - gi\|197261893\|ref\|ZP_03161967.1\| protein YcfR [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|194451251, gi... - gi\|194451251\|ref\|YP_002045213.1\| protein YcfR [Salmonella enterica subsp. enterica serovar Heidelber... gi\|194471936, gi... - gi\|194471936\|ref\|ZP_03077920.1\| protein YcfR [Salmonella enterica subsp. enterica serovar Kentucky s... gi\|205341230, gi... - gi\|205341230\|gb\|EDZ27994.1\| protein YcfR [Salmonella enterica subsp. enterica serovar Weltevreden st... gi\|194444614, gi... - gi\|194444614\|ref\|YP_002040468.1\| protein YcfR [Salmonella enterica subsp. enterica serovar Newport s... gi\|205332602, gi... - gi\|205332602\|gb\|EDZ19366.1\| protein YcfR [Salmonella enterica subsp. enterica serovar Kentucky str. ... gi\|168244285, gi... - gi\|205336788\|gb\|EDZ23552.1\| protein YcfR [Salmonella enterica subsp. enterica serovar Heidelberg str... gi\|167992002, gi... - gi\|205329803\|gb\|EDZ16567.1\| protein YcfR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s...	1.0E-21	[1..85]	[1..85]
gi\|124499567, gi... - gi\|124529859\|ref\|ZP_01700703.1\| protein of unknown function DUF1471 [Escherichia coli B], gi\|1244995... YCFR_ECOLI - UPF0379 protein ycfR precursor - Escherichia coli gi\|187767880, gi... - gi\|187767880\|gb\|EDU31724.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|189359831, gi... - gi\|189359831\|gb\|EDU78250.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|168790090, gi... - gi\|189370356\|gb\|EDU88772.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|168783482, gi... - gi\|188999171\|gb\|EDU68157.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|169755421, gi... - gi\|170020493\|ref\|YP_001725447.1\| hypothetical protein EcolC_2489 [Escherichia coli ATCC 8739], gi\|16... gi\|189375506, gi... - gi\|189375506\|gb\|EDU93922.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|170518643, gi... - gi\|170680925\|ref\|YP_001744066.1\| hypothetical protein EcSMS35_2014 [Escherichia coli SMS-3-5], gi\|17... gi\|169888598, gi... - gi\|170080763\|ref\|YP_001730083.1\| hypothetical protein ECDH10B_1184 [Escherichia coli str. K-12 subst... YCFR_ECOL6, BHSA... - UPF0379 protein ycfR OS=Escherichia coli O6 GN=ycfR PE=3 SV=1, Multiple stress resistance protein Bh... gi\|168751338, gi... - gi\|188014632\|gb\|EDU52754.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|4062681, gi\|8... - gi\|89107958\|ref\|AP_001738.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|406... gi\|189365176, gi... - gi\|189365176\|gb\|EDU83592.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|227836735, gi... - gi\|227886531\|ref\|ZP_04004336.1\| outer membrane protein [Escherichia coli 83972], gi\|227836735\|gb\|EEJ... gi\|13360954, gi\|... - gi\|15830744\|ref\|NP_309517.1\| hypothetical protein ECs1490 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|168757827, gi... - gi\|189355236\|gb\|EDU73655.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|238862966, gi... - gi\|238900366\|ref\|YP_002926162.1\| hypothetical protein BWG_0960 [Escherichia coli BW2952], gi\|2388629... gi\|75195295, gi\|... - gi\|75195295\|ref\|ZP_00705365.1\| COG0474: Cation transport ATPase [Escherichia coli HS], gi\|157160639\|... gi\|218351377, gi... - gi\|218694645\|ref\|YP_002402312.1\| hypothetical protein EC55989_1224 [Escherichia coli 55989], gi\|2183... gi\|242376914, gi... - gi\|251784641\|ref\|YP_002998945.1\| hypothetical protein B21_01116 [Escherichia coli BL21], gi\|24237691... gi\|194412155, gi... - gi\|75208961\|ref\|ZP_00709231.1\| COG0474: Cation transport ATPase [Escherichia coli B171], gi\|19442980... gi\|218553689, gi... - gi\|218553689\|ref\|YP_002386602.1\| hypothetical protein ECIAI1_1149 [Escherichia coli IAI1], gi\|218360... gi\|253324909, gi... - gi\|254288026\|ref\|YP_003053774.1\| hypothetical protein ECD_01108 [Escherichia coli BL21(DE3)], gi\|253... gi\|190901383, gi... - gi\|75228217\|ref\|ZP_00714876.1\| COG0474: Cation transport ATPase [Escherichia coli B7A], gi\|191168589... gi\|254161218, gi... - gi\|254161218\|ref\|YP_003044326.1\| hypothetical protein ECB_01108 [Escherichia coli B str. REL606], gi... gi\|193070894, gi... - gi\|75234220\|ref\|ZP_00718613.1\| COG0474: Cation transport ATPase [Escherichia coli E110019], gi\|19307... gi\|218431620, gi... - gi\|218704523\|ref\|YP_002412042.1\| hypothetical protein ECUMN_1290 [Escherichia coli UMN026], gi\|21843... gi\|254792495, gi... - gi\|254792495\|ref\|YP_003077332.1\| hypothetical protein ECSP_1414 [Escherichia coli O157:H7 str. TW143... gi\|192926049, gi... - gi\|75255627\|ref\|ZP_00727406.1\| COG0474: Cation transport ATPase [Escherichia coli E22], gi\|193066277... gi\|75511399, gi\|... - gi\|75511399\|ref\|ZP_00734082.1\| COG0474: Cation transport ATPase [Escherichia coli 53638], gi\|1884958... gi\|82777275, gi\|... - gi\|82777275\|ref\|YP_403624.1\| hypothetical protein SDY_2038 [Shigella dysenteriae Sd197], gi\|81241423... EG13436 - biofilm, cell surface and signaling protein / Peroxide and cadmium resistance periplasmic protein; b... gi\|208727606, gi... - gi\|208807805\|ref\|ZP_03250142.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|195938871 - gi\|195938871\|ref\|ZP_03084253.1\| hypothetical protein EscherichcoliO157_21007 [Escherichia coli O157:... gi\|208738086, gi... - gi\|208822601\|ref\|ZP_03262920.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|208815140, gi... - gi\|208815140\|ref\|ZP_03256319.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|209911627, gi... - gi\|209918368\|ref\|YP_002292452.1\| hypothetical protein ECSE_1177 [Escherichia coli SE11], gi\|20991162... gi\|194418087, gi... - gi\|83569565\|ref\|ZP_00921017.1\| COG0474: Cation transport ATPase [Shigella dysenteriae 1012], gi\|1944... gi\|209159337, gi... - gi\|209397937\|ref\|YP_002269957.1\| hypothetical protein ECH74115_1492 [Escherichia coli O157:H7 str. E... gi\|83584879, gi\|... - gi\|83584879\|ref\|ZP_00923537.1\| COG0474: Cation transport ATPase [Escherichia coli 101-1], gi\|1944397... gi\|217318470, gi... - gi\|217328043\|ref\|ZP_03444125.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|157157687, gi... - gi\|75190169\|ref\|ZP_00703436.1\| COG0474: Cation transport ATPase [Escherichia coli E24377A], gi\|15715... gi\|215264395, gi... - gi\|215486323\|ref\|YP_002328754.1\| predicted outer membrane protein that influences biofilm formation ... BHSA_ECO57 - Multiple stress resistance protein BhsA OS=Escherichia coli O157:H7 GN=bhsA PE=3 SV=1 BHSA_ECOL6 - Multiple stress resistance protein BhsA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPE... gi\|12514662, gi\|... - gi\|15801229\|ref\|NP_287246.1\| hypothetical protein Z1751 [Escherichia coli O157:H7 EDL933], gi\|125146... EG13436 - biofilm, cell surface and signaling protein / Peroxide and cadmium resistance periplasmic protein; b...	9.0E-21	[1..85]	[1..85]
gi\|91071841, gi\|... - gi\|91210267\|ref\|YP_540253.1\| hypothetical protein UTI89_C1240 [Escherichia coli UTI89], gi\|91071841\|... gi\|110641288, gi... - gi\|110641288\|ref\|YP_669018.1\| hypothetical protein ECP_1104 [Escherichia coli 536], gi\|110342880\|gb\|... gi\|218364762, gi... - gi\|218557993\|ref\|YP_002390906.1\| hypothetical protein ECS88_1126 [Escherichia coli S88], gi\|21836476... gi\|237706902, gi... - gi\|237706902\|ref\|ZP_04537383.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|117623297, gi... - gi\|117623297\|ref\|YP_852210.1\| hypothetical protein APECO1_193 [Escherichia coli APEC O1], gi\|1155124... gi\|218426628, gi... - gi\|218689064\|ref\|YP_002397276.1\| hypothetical protein ECED1_1255 [Escherichia coli ED1a], gi\|2184266... gi\|75239609, gi\|... - gi\|75239609\|ref\|ZP_00723576.1\| COG0474: Cation transport ATPase [Escherichia coli F11], gi\|191173058...	1.0E-20	[1..85]	[1..85]
gi\|73855150, gi\|... - gi\|74311673\|ref\|YP_310092.1\| hypothetical protein SSON_1132 [Shigella sonnei Ss046], gi\|73855150\|gb\|...	1.0E-20	[1..85]	[1..85]
gi\|81245831, gi\|... - gi\|82544420\|ref\|YP_408367.1\| hypothetical protein SBO_1949 [Shigella boydii Sb227], gi\|81245831\|gb\|A...	3.0E-20	[1..85]	[1..85]
gi\|26107180, gi\|... - gi\|26246781\|ref\|NP_752821.1\| hypothetical protein c0891 [Escherichia coli CFT073], gi\|26107180\|gb\|AA...	1.0E-19	[1..85]	[49..134]
gi\|218557711, gi... - gi\|218557711\|ref\|YP_002390624.1\| hypothetical protein ECS88_0824 [Escherichia coli S88], gi\|21836448... gi\|91209840, gi\|... - gi\|91209840\|ref\|YP_539826.1\| hypothetical protein UTI89_C0809 [Escherichia coli UTI89], gi\|91071414\|... gi\|237707234, gi... - gi\|237707234\|ref\|ZP_04537715.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689...	2.0E-19	[1..85]	[49..134]
gi\|115512111, gi... - gi\|117622987\|ref\|YP_851900.1\| hypothetical protein APECO1_1285 [Escherichia coli APEC O1], gi\|115512...	2.0E-19	[1..85]	[50..135]
gi\|81240263, gi\|... - gi\|82776115\|ref\|YP_402462.1\| hypothetical protein SDY_0791 [Shigella dysenteriae Sd197], gi\|81240263...	3.0E-19	[1..85]	[49..134]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNVKNLIAA AVLSSLSFAS FAAVEVQATP EGQQKFGTIS ANGGTNLGSL EDQLAQKAQE  60
   61 MGAKSFRITS VTGPNTLHGT AVIYK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.30103
Match:	2nocA
Description:	No description for 2nocA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits