YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|223489007, gi...
Organism:	Carboxydibrachium pacificum DSM 12653
Length:	193 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|223489007, gi....

Description	E-value	Query Range	Subject Range
KDPC_NITHX - Potassium-transporting ATPase KdpC subunit OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=k...	282.0	[0..1]	[192..1]
KDPC_XANP2 - Potassium-transporting ATPase KdpC subunit OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2...	282.0	[0..1]	[187..1]
ATKC_BRAJA - Potassium-transporting ATPase C chain OS=Bradyrhizobium japonicum GN=kdpC PE=3 SV=1 KDPC_BRADU - Potassium-transporting ATPase KdpC subunit OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM ...	282.0	[0..1]	[185..1]
KDPC_BURXL - Potassium-transporting ATPase KdpC subunit OS=Burkholderia xenovorans (strain LB400) GN=kdpC PE=3 SV...	281.0	[0..1]	[189..1]
KDPC_DECAR - Potassium-transporting ATPase KdpC subunit OS=Dechloromonas aromatica (strain RCB) GN=kdpC PE=3 SV=1	280.0	[0..1]	[189..1]
gi\|34497052, gi\|... - gi\|34497052\|ref\|NP_901267.1\| K+-transporting ATPase [Chromobacterium violaceum ATCC 12472], gi\|34102...	279.0	[0..2]	[190..15]
gi\|25290647 - gi\|25290647\|pir\|\|F97351 K+-transporting ATPase, c chain CAC3680 [imported] - Clostridium acetobutyli... gi\|15026783, gi\|... - gi\|15896912\|ref\|NP_350261.1\| K+-transporting ATPase, c chain [Clostridium acetobutylicum ATCC 824], ...	278.0	[0..1]	[192..1]
ATKC_RHILO - Potassium-transporting ATPase C chain OS=Rhizobium loti GN=kdpC PE=3 SV=1 KDPC_RHILO - Potassium-transporting ATPase KdpC subunit OS=Rhizobium loti (strain MAFF303099) GN=kdpC PE=3 SV=1	278.0	[0..1]	[177..1]
gi\|25290655, gi\|... - gi\|25290656\|pir\|\|AH3022 potassium-transporting ATPase C chain kdpC [imported] - Agrobacterium tumefa... KDPC_AGRFC - Potassium-transporting ATPase KdpC subunit OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=kdpC...	278.0	[0..1]	[185..1]
KDPC_CLOAB - Potassium-transporting ATPase KdpC subunit OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 ... ATKC_CLOAB - Potassium-transporting ATPase C chain OS=Clostridium acetobutylicum GN=kdpC PE=2 SV=2	274.0	[0..2]	[192..1]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEEIKRTIK FTLVFMVLLG LVYPFVMTGI ANLLFPYQAK GSIIKVDGKP VGSELIGQKF  60
   61 TDPRWFMGRP SAVDYDATSS GGTNYALSNP KFHEELEKNI EEFLKKNPGV KRSEIPADIV 120
  121 TSSGSGLDPH ISPKAAYLQV KRVAKVNGLP EEVVKKLVDK NIEGRFLGLF GEPRVNVLKL 180
  181 NLSLLEEIKK HKK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	52.638272
Match:	PF02669.6
Description:	No description for PF02669.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits