YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|214003172
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-3139
Length:	298 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|214003172.

Description	E-value	Query Range	Subject Range
EUTC_SALPA - Ethanolamine ammonia-lyase light chain OS=Salmonella paratyphi A GN=eutC PE=3 SV=1 EUTC_SALPK - Ethanolamine ammonia-lyase light chain OS=Salmonella paratyphi A (strain AKU_12601) GN=eutC PE=3 SV=... EUTC_SALPA - Ethanolamine ammonia-lyase light chain OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=eutC...	0.0	[1..298]	[1..298]
EUTC_SALTY - Ethanolamine ammonia-lyase light chain OS=Salmonella typhimurium GN=eutC PE=3 SV=3 lcl\|NC_016856.1_... - [gene=eutC] [protein=ethanolamine ammonia-lyase small subunit] [protein_id=YP_005238543.1] [location... gi\|205329909, gi... - gi\|205329909\|gb\|EDZ16673.1\| ethanolamine ammonia-lyase, light chain [Salmonella enterica subsp. ente... EUTC_SALTY - Ethanolamine ammonia-lyase light chain OS=Salmonella typhimurium GN=eutC PE=3 SV=3 gi\|168817795, gi... - gi\|205345125\|gb\|EDZ31889.1\| ethanolamine ammonia-lyase, light chain [Salmonella enterica subsp. ente... EUTC_SALPC - Ethanolamine ammonia-lyase light chain OS=Salmonella paratyphi C (strain RKS4594) GN=eutC PE=3 SV=1 EUTC_SALTY - Ethanolamine ammonia-lyase light chain OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 70072...	0.0	[1..298]	[1..298]
gi\|75515785, gi\|... - gi\|75515785\|ref\|ZP_00737920.1\| COG4302: Ethanolamine ammonia-lyase, small subunit [Escherichia coli ... gi\|192927622, gi... - gi\|75257252\|ref\|ZP_00728776.1\| COG4302: Ethanolamine ammonia-lyase, small subunit [Escherichia coli ... EUTC_ECOLC - Ethanolamine ammonia-lyase light chain OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN... gi\|75229229, gi\|... - gi\|75229229\|ref\|ZP_00715797.1\| COG4302: Ethanolamine ammonia-lyase, small subunit [Escherichia coli ... gi\|194427349, gi... - gi\|75211410\|ref\|ZP_00711500.1\| COG4302: Ethanolamine ammonia-lyase, small subunit [Escherichia coli ... EUTC_ECOHS - Ethanolamine ammonia-lyase light chain OS=Escherichia coli O9:H4 (strain HS) GN=eutC PE=3 SV=1 EUTC_ECOL6 - Ethanolamine ammonia-lyase light chain OS=Escherichia coli O6 GN=eutC PE=3 SV=1 gi\|194423364, gi... - gi\|83586903\|ref\|ZP_00925534.1\| COG4302: Ethanolamine ammonia-lyase, small subunit [Escherichia coli ... gi\|227887485, gi... - gi\|227887485\|ref\|ZP_04005290.1\| ethanolamine ammonia-lyase small subunit [Escherichia coli 83972], g... gi\|242378048, gi... - gi\|251785775\|ref\|YP_003000079.1\| hypothetical protein B21_02302 [Escherichia coli BL21], gi\|24237804... gi\|253978491, gi... - gi\|254289184\|ref\|YP_003054932.1\| ethanolamine ammonia-lyase small subunit [Escherichia coli BL21(DE3... gi\|253974324, gi... - gi\|254162423\|ref\|YP_003045531.1\| ethanolamine ammonia-lyase small subunit [Escherichia coli B str. R... EUTC_ECOL6 - Ethanolamine ammonia-lyase light chain OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC... gi\|124531854, gi... - gi\|124531854\|ref\|ZP_01701961.1\| Ethanolamine ammonia-lyase [Escherichia coli B], gi\|124498337\|gb\|EAY... EUTC_ECO55 - Ethanolamine ammonia-lyase light chain OS=Escherichia coli (strain 55989 / EAEC) GN=eutC PE=3 SV=1 EUTC_ECO8A - Ethanolamine ammonia-lyase light chain OS=Escherichia coli O8 (strain IAI1) GN=eutC PE=3 SV=1	0.0	[1..298]	[1..295]
gi\|192958332, gi... - gi\|75237808\|ref\|ZP_00721824.1\| COG4302: Ethanolamine ammonia-lyase, small subunit [Escherichia coli ... EUTC_ECO24 - Ethanolamine ammonia-lyase light chain OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=eutC ...	0.0	[1..298]	[1..295]
EUTC_SHIDS - Ethanolamine ammonia-lyase light chain OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=eutC PE=...	0.0	[1..298]	[1..295]
EUTC_ECOLI - Ethanolamine ammonia-lyase light chain (EC 4.3.1.7) (Ethanolamine ammonia-lyase small subunit) - Esc... gi\|1799869, gi\|8... - gi\|89109254\|ref\|AP_003034.1\| ethanolamine ammonia-lyase, small subunit (light chain) [Escherichia co... EUTC_ECOK1 - Ethanolamine ammonia-lyase light chain OS=Escherichia coli O1:K1 / APEC GN=eutC PE=3 SV=1 EUTC_ECODH - Ethanolamine ammonia-lyase light chain OS=Escherichia coli (strain K12 / DH10B) GN=eutC PE=3 SV=1 EUTC_ECOUT - Ethanolamine ammonia-lyase light chain OS=Escherichia coli (strain UTI89 / UPEC) GN=eutC PE=3 SV=1 EUTC_ECOL5 - Ethanolamine ammonia-lyase light chain OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=eutC PE... EG50007 - ethanolamine ammonia-lyase, small subunit (light chain) / Ethanolamine ammonia lyase, small subunit,... EUTC_ECO45 - Ethanolamine ammonia-lyase light chain OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=eutC PE=3 ... gi\|75240098, gi\|... - gi\|75240098\|ref\|ZP_00724057.1\| COG4302: Ethanolamine ammonia-lyase, small subunit [Escherichia coli ... EG50007 - ethanolamine ammonia-lyase, small subunit (light chain) / Ethanolamine ammonia lyase, small subunit,... gi\|237704963, gi... - gi\|237704963\|ref\|ZP_04535444.1\| ethanolamine ammonia-lyase subunit light [Escherichia sp. 3_2_53FAA]... EUTC_ECOBW - Ethanolamine ammonia-lyase light chain OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=eutC PE...	0.0	[1..298]	[1..295]
EUTC_SHISS - Ethanolamine ammonia-lyase light chain OS=Shigella sonnei (strain Ss046) GN=eutC PE=3 SV=1	0.0	[1..298]	[1..295]
EUTC_ECO57 - Ethanolamine ammonia-lyase light chain OS=Escherichia coli O157:H7 GN=eutC PE=3 SV=1 EUTC_ECO5E - Ethanolamine ammonia-lyase light chain OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=eutC PE... gi\|208739409, gi... - gi\|208819286\|ref\|ZP_03259606.1\| ethanolamine ammonia-lyase, light chain [Escherichia coli O157:H7 st... gi\|208812194, gi... - gi\|208812194\|ref\|ZP_03253523.1\| ethanolamine ammonia-lyase, light chain [Escherichia coli O157:H7 st... gi\|209763970, gi... - pir\|\|B85887 ethanolamine ammonia-lyase, light chain [imported] - Escherichia coli (strain O157:H7, s... gi\|12516821, gi\|... - gi\|15802971\|ref\|NP_289001.1\| ethanolamine ammonia-lyase small subunit [Escherichia coli O157:H7 EDL9... gi\|189003205, gi... - gi\|189003205\|gb\|EDU72191.1\| ethanolamine ammonia-lyase, light chain [Escherichia coli O157:H7 str. E... gi\|187770649, gi... - gi\|187770649\|gb\|EDU34493.1\| ethanolamine ammonia-lyase, light chain [Escherichia coli O157:H7 str. E... gi\|189362204, gi... - gi\|189362204\|gb\|EDU80623.1\| ethanolamine ammonia-lyase, light chain [Escherichia coli O157:H7 str. E... gi\|254593793, gi... - gi\|254794393\|ref\|YP_003079230.1\| ethanolamine ammonia-lyase, small subunit (light chain) [Escherichi... gi\|189356557, gi... - gi\|189356557\|gb\|EDU74976.1\| ethanolamine ammonia-lyase, light chain [Escherichia coli O157:H7 str. E... gi\|208725934, gi... - gi\|208806133\|ref\|ZP_03248470.1\| ethanolamine ammonia-lyase, light chain [Escherichia coli O157:H7 st... gi\|195936591 - gi\|195936591\|ref\|ZP_03081973.1\| ethanolamine ammonia-lyase small subunit [Escherichia coli O157:H7 s... gi\|189378542, gi... - gi\|189378542\|gb\|EDU96958.1\| ethanolamine ammonia-lyase, light chain [Escherichia coli O157:H7 str. E... gi\|168787786, gi... - gi\|189372304\|gb\|EDU90720.1\| ethanolamine ammonia-lyase, light chain [Escherichia coli O157:H7 str. E... gi\|168748503, gi... - gi\|188017033\|gb\|EDU55155.1\| ethanolamine ammonia-lyase, light chain [Escherichia coli O157:H7 str. E...	0.0	[1..298]	[1..295]
gi\|13362781, gi\|... - gi\|15832565\|ref\|NP_311338.1\| ethanolamine ammonia-lyase small subunit [Escherichia coli O157:H7 str.... gi\|217319543, gi... - gi\|217327176\|ref\|ZP_03443259.1\| ethanolamine ammonia-lyase, light chain [Escherichia coli O157:H7 st... gi\|25356208 - pir\|\|G91042 ethanolamine ammonia-lyase light chain [imported] - Escherichia coli (strain O157:H7, su... gi\|13362781, gi\|... - gi\|15832565\|ref\|NP_311338.1\| ethanolamine ammonia-lyase small subunit [Escherichia coli O157:H7], gi... gi\|189368472, gi... - gi\|189368472\|gb\|EDU86888.1\| ethanolamine ammonia-lyase, light chain [Escherichia coli O157:H7 str. E...	0.0	[1..298]	[1..295]
gi\|194432040, gi... - gi\|83570663\|ref\|ZP_00922106.1\| COG4302: Ethanolamine ammonia-lyase, small subunit [Shigella dysenter...	0.0	[1..298]	[1..294]

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Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQKQIEEIV RSVMASMGQD VPQPVAPSTQ EGAKPQCAAP TVTESCALDL GSAEAKAWIG  60
   61 VENPHRADVL TELRRSTAAR VCTGRAGPRP RTQALLRFLA DHSRSKDTVL KEVPEEWGKA 120
  121 QGLLEVRSEI SDKNLYLTRP DMGRRLSPEA IDALKSQCVM NPDVQVVVSD GLSTDAITAN 180
  181 YEEILPPLLA GLKQAGLNVG TPFFVRY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [208-298]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRVKIEDQIG EILGAKVVIL LVGERPGLGQ SESLSCYAVY SPRVATTVEA DRTCISNIHQ  60
   61 GGTPPVEAAA VIVDLAKRML EQKASGINMT R

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.625	0.310	cobalt ion binding	a.4.1	Homeodomain-like
View	Download	0.546	0.257	cobalt ion binding	a.1.1	Globin-like
View	Download	0.533	0.035	cobalt ion binding	a.74.1	Cyclin-like
View	Download	0.655	0.017	cobalt ion binding	a.5.3	N-terminal domain of phosphatidylinositol transfer protein sec14p
View	Download	0.549	N/A	N/A	d.146.1	Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits