YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213023842
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. 404ty
Length:	88 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213023842.

Description	E-value	Query Range	Subject Range
gi\|21242108, gi\|... - gi\|21242108\|ref\|NP_641690.1\| hypothetical protein XAC1355 [Xanthomonas axonopodis pv. citri str. 306...	114.0	[0..1]	[88..1]
gi\|78035394, gi\|... - gi\|78046964\|ref\|YP_363139.1\| hypothetical protein XCV1408 [Xanthomonas campestris pv. vesicatoria st...	114.0	[0..1]	[88..1]
gi\|194449043, gi... - gi\|194449043\|ref\|YP_002044853.1\| hypothetical protein SeHA_C0952 [Salmonella enterica subsp. enteric... gi\|197240348, gi... - gi\|197262093\|ref\|ZP_03162167.1\| transcriptional regulator, TraR/DksA family [Salmonella enterica sub... gi\|168240691, gi... - gi\|205340360\|gb\|EDZ27124.1\| transcriptional regulator, TraR/DksA family [Salmonella enterica subsp. ... gi\|194443834, gi... - gi\|194443834\|ref\|YP_002040061.1\| transcriptional regulator, TraR/DksA family [Salmonella enterica su... gi\|167550484, gi... - gi\|205324526\|gb\|EDZ12365.1\| transcriptional regulator, TraR/DksA family [Salmonella enterica subsp. ... gi\|167992059, gi... - gi\|205329587\|gb\|EDZ16351.1\| transcriptional regulator, TraR/DksA family [Salmonella enterica subsp. ... gi\|16764187, gi\|... - gi\|16764187\|ref\|NP_459802.1\| hypothetical protein STM0825 [Salmonella typhimurium LT2], gi\|16419331\|... gi\|161614925, gi... - gi\|161614925\|ref\|YP_001588890.1\| hypothetical protein SPAB_02679 [Salmonella enterica subsp. enteric... gi\|238913892 - gi\|238913892\|ref\|ZP_04657729.1\| hypothetical protein SentesTe_22545 [Salmonella enterica subsp. ente... gi\|62179391, gi\|... - gi\|62179391\|ref\|YP_215808.1\| hypothetical protein SC0821 [Salmonella enterica subsp. enterica serova... gi\|224467164, gi... - gi\|224582637\|ref\|YP_002636435.1\| hypothetical Zinc-finger containing protein [Salmonella enterica su... lcl\|NC_016856.1_... - [gene=ybiI] [protein=hypothetical protein] [protein_id=YP_005236550.1] [location=complement(892059.....	113.0	[0..1]	[88..1]
gi\|194418593, gi... - gi\|194433096\|ref\|ZP_03065378.1\| C4-type zinc finger protein, DksA/TraR family [Shigella dysenteriae ... gi\|227838986, gi... - gi\|227884234\|ref\|ZP_04002039.1\| DksA/TraR family C4 family zinc finger protein [Escherichia coli 839... gi\|75178407, gi\|... - gi\|75178407\|ref\|ZP_00698461.1\| COG1734: DnaK suppressor protein [Shigella boydii BS512], gi\|18773340... gi\|218357171, gi... - gi\|218549630\|ref\|YP_002383421.1\| hypothetical protein EFER_2305 [Escherichia fergusonii ATCC 35469],... gi\|226898447, gi... - gi\|237707237\|ref\|ZP_04537718.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|82776120, gi\|... - gi\|82776120\|ref\|YP_402467.1\| hypothetical protein SDY_0796 [Shigella dysenteriae Sd197], gi\|81240268... gi\|215263962, gi... - gi\|215485890\|ref\|YP_002328321.1\| hypothetical protein E2348C_0755 [Escherichia coli O127:H6 str. E23... gi\|81244659, gi\|... - gi\|82543248\|ref\|YP_407195.1\| hypothetical protein SBO_0691 [Shigella boydii Sb227], gi\|81244659\|gb\|A... gi\|91071411, gi\|... - gi\|91209837\|ref\|YP_539823.1\| hypothetical protein UTI89_C0806 [Escherichia coli UTI89], gi\|91071411\|... gi\|218426153, gi... - gi\|218688589\|ref\|YP_002396801.1\| hypothetical protein ECED1_0768 [Escherichia coli ED1a], gi\|2184261... gi\|218557708, gi... - gi\|218557708\|ref\|YP_002390621.1\| hypothetical protein ECS88_0821 [Escherichia coli S88], gi\|21836447... gi\|218704181, gi... - gi\|218704181\|ref\|YP_002411700.1\| hypothetical protein ECUMN_0947 [Escherichia coli UMN026], gi\|21843... gi\|26107177, gi\|... - gi\|26246778\|ref\|NP_752818.1\| hypothetical protein c0888 [Escherichia coli CFT073], gi\|26107177\|gb\|AA... gi\|218699176, gi... - gi\|218699176\|ref\|YP_002406805.1\| hypothetical protein ECIAI39_0780 [Escherichia coli IAI39], gi\|2183...	111.0	[0..1]	[88..1]
gi\|89107654, gi\|... - gi\|89107654\|ref\|AP_001434.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|406... EG12421 - DksA-type zinc finger protein / Function unknown, DksA-type zinc finger protein gi\|75230646, gi\|... - gi\|75230646\|ref\|ZP_00717117.1\| COG1734: DnaK suppressor protein [Escherichia coli B7A], gi\|191166160... gi\|192957353, gi... - gi\|75236139\|ref\|ZP_00720263.1\| COG1734: DnaK suppressor protein [Escherichia coli E110019], gi\|19306... gi\|194438417, gi... - gi\|83586106\|ref\|ZP_00924743.1\| COG1734: DnaK suppressor protein [Escherichia coli 101-1], gi\|1944384... EG12421 - DksA-type zinc finger protein / Function unknown, DksA-type zinc finger protein gi\|157065959, gi... - gi\|75194954\|ref\|ZP_00705024.1\| COG1734: DnaK suppressor protein [Escherichia coli HS], gi\|157160279\|... gi\|253972781, gi... - gi\|254160880\|ref\|YP_003043988.1\| hypothetical protein ECB_00770 [Escherichia coli B str. REL606], gi... gi\|253774194, gi... - gi\|254287694\|ref\|YP_003053442.1\| hypothetical protein ECD_00770 [Escherichia coli BL21(DE3)], gi\|253... gi\|242376595, gi... - gi\|251784322\|ref\|YP_002998626.1\| hypothetical protein B21_00787 [Escherichia coli BL21], gi\|24237659... gi\|238860287, gi... - gi\|238900062\|ref\|YP_002925858.1\| hypothetical protein BWG_0656 [Escherichia coli BW2952], gi\|2388602... gi\|218553389, gi... - gi\|218553389\|ref\|YP_002386302.1\| hypothetical protein ECIAI1_0841 [Escherichia coli IAI1], gi\|218360... gi\|218694277, gi... - gi\|218694277\|ref\|YP_002401944.1\| hypothetical protein EC55989_0847 [Escherichia coli 55989], gi\|2183... gi\|73854823, gi\|... - gi\|74311346\|ref\|YP_309765.1\| hypothetical protein SSON_0782 [Shigella sonnei Ss046], gi\|73854823\|gb\|... gi\|75257599, gi\|... - gi\|75257599\|ref\|ZP_00729096.1\| COG1734: DnaK suppressor protein [Escherichia coli E22], gi\|193064421... gi\|188493420, gi... - gi\|75512806\|ref\|ZP_00735298.1\| COG1734: DnaK suppressor protein [Escherichia coli 53638], gi\|1884934... gi\|124527022, gi... - gi\|124527022\|ref\|ZP_01698859.1\| transcriptional regulator, TraR/DksA family [Escherichia coli B], gi... gi\|170020841, gi... - gi\|170020841\|ref\|YP_001725795.1\| hypothetical protein EcolC_2840 [Escherichia coli ATCC 8739], gi\|16... gi\|169888297, gi... - gi\|170080462\|ref\|YP_001729782.1\| hypothetical protein ECDH10B_0871 [Escherichia coli str. K-12 subst... YBII_ECOLI - Hypothetical protein ybiI - Escherichia coli gi\|209911309, gi... - gi\|209918050\|ref\|YP_002292134.1\| hypothetical protein ECSE_0859 [Escherichia coli SE11], gi\|20991130...	110.0	[0..1]	[88..1]
gi\|157156169, gi... - gi\|75189844\|ref\|ZP_00703111.1\| COG1734: DnaK suppressor protein [Escherichia coli E24377A], gi\|15715...	110.0	[0..1]	[88..1]
gi\|194428212, gi... - gi\|75210603\|ref\|ZP_00710751.1\| COG1734: DnaK suppressor protein [Escherichia coli B171], gi\|19442821...	110.0	[0..1]	[88..1]
gi\|84367381, gi\|... - gi\|84623441\|ref\|YP_450813.1\| hypothetical protein XOO_1784 [Xanthomonas oryzae pv. oryzae MAFF 31101... gi\|58426104, gi\|... - gi\|58581510\|ref\|YP_200526.1\| hypothetical protein XOO1887 [Xanthomonas oryzae pv. oryzae KACC10331],... gi\|188521700, gi... - gi\|188577248\|ref\|YP_001914177.1\| hypothetical protein PXO_01750 [Xanthomonas oryzae pv. oryzae PXO99...	109.0	[0..1]	[88..1]
gi\|188992393, gi... - gi\|188992393\|ref\|YP_001904403.1\| hypothetical protein xccb100_2998 [Xanthomonas campestris pv. campe... gi\|21230761, gi\|... - gi\|21230761\|ref\|NP_636678.1\| hypothetical protein XCC1304 [Xanthomonas campestris pv. campestris str... gi\|66574574, gi\|... - gi\|66769242\|ref\|YP_244004.1\| hypothetical protein XC_2936 [Xanthomonas campestris pv. campestris str...	109.0	[0..1]	[88..1]
gi\|110614351, gi... - gi\|110804803\|ref\|YP_688323.1\| hypothetical protein SFV_0786 [Shigella flexneri 5 str. 8401], gi\|1106...	109.0	[0..1]	[88..1]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGWANDDA VNEQINNTIE DAVARARGEL PHGESRDECE SCGDPIPEAR RKAVPGVRLC  60
   61 ISCQQEKDLH NATFSGYNRR GSKDSQLR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.045757
Match:	1tjlA
Description:	Crystal structure of transcription factor DksA from E. coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits