YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213648117
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. J185
Length:	180 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213648117.

Description	E-value	Query Range	Subject Range
gi\|62181351, gi\|... - gi\|62181351\|ref\|YP_217768.1\| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica ...	5.0E-24	[1..180]	[1..180]
gi\|197095205, gi... - gi\|197363728\|ref\|YP_002143365.1\| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enter... gi\|56414800, gi\|... - gi\|56414800\|ref\|YP_151875.1\| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica ...	1.0E-23	[1..180]	[1..180]
gi\|68512319, gi\|... - gi\|68561487\|ref\|ZP_00600782.1\| 4Fe-4S ferredoxin, iron-sulfur binding:Polysulphide reductase, NrfD [...	4.0E-23	[33..180]	[6..154]
gi\|76164515, gi\|... - gi\|76260598\|ref\|ZP_00768231.1\| 4Fe-4S ferredoxin, iron-sulfur binding:Polysulphide reductase, NrfD [...	6.0E-23	[33..180]	[6..154]
gi\|237706657, gi... - gi\|237706657\|ref\|ZP_04537138.1\| formate hydrogenlyase subunit 6 [Escherichia sp. 3_2_53FAA], gi\|2268... gi\|227834527, gi... - gi\|227888258\|ref\|ZP_04006063.1\| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli ... gi\|170765966, gi... - gi\|170765966\|ref\|ZP_02900777.1\| formate hydrogenlyase, subunit F [Escherichia albertii TW07627], gi\|... gi\|218428408, gi... - gi\|218690844\|ref\|YP_002399056.1\| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli... gi\|26109526, gi\|... - gi\|26249119\|ref\|NP_755159.1\| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli CFT... gi\|91212080, gi\|... - gi\|91212080\|ref\|YP_542066.1\| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli UTI... gi\|115514076, gi... - gi\|117624952\|ref\|YP_853940.1\| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli AP...	8.0E-23	[1..178]	[1..178]
NDS8A_ARATH - NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-A, mitochondrial OS=Arabidopsis thaliana GN=At...	8.0E-23	[2..135]	[80..222]
gi\|71282673, gi\|... - gi\|71482494\|ref\|ZP_00662180.1\| 4Fe-4S ferredoxin, iron-sulfur binding:Polysulphide reductase, NrfD [...	8.0E-23	[33..180]	[26..174]
gi\|148655927, gi... - gi\|148655927\|ref\|YP_001276132.1\| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Ro...	9.0E-23	[33..177]	[6..151]
gi\|190908291, gi... - gi\|75241664\|ref\|ZP_00725501.1\| COG1143: Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreducta... gi\|110642843, gi... - gi\|110642843\|ref\|YP_670573.1\| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli 53...	9.0E-23	[1..178]	[1..178]
gi\|82778087, gi\|... - gi\|82778087\|ref\|YP_404436.1\| formate hydrogenlyase complex iron-sulfur subunit [Shigella dysenteriae...	1.0E-22	[1..178]	[1..178]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTFIKKVIK TGTATSSYPL EPIAVDKNFR GKPEHNPQQC IGCAACVNAC PSNALTVETD  60
   61 LATNELAWQF NLGRCIFCGR CEEVCPTAAI KLSQEYELAV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.522879
Match:	2fug9
Description:	Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [101-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WKKEDFLQQS RFALCNCRVC NRPFAVQKEI DYAIALLAHN GDSRAENHRE SFETCPDCKR  60
   61 QKCLVPSDRI ELTRHMKEVS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.221849
Match:	1hfeL
Description:	Fe-only hydrogenase larger subunit, C-domain; Fe-only hydrogenase larger subunit, N-domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits