YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|198149402, gi...
Organism:	Drosophila pseudoobscura pseudoobscura
Length:	114 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|198149402, gi....

Description	E-value	Query Range	Subject Range
gi\|114685320 - gi\|114685320\|ref\|XP_001159736.1\| PREDICTED: hypothetical protein [Pan troglodytes]	218.0	[0..3]	[114..254]
gi\|109462885 - gi\|109462885\|ref\|XP_001080016.1\| PREDICTED: similar to yippee-like 3 [Rattus norvegicus]	214.0	[0..3]	[114..166]
gi\|112180619 - gi\|112180619\|gb\|AAH09171.4\| Ypel3 protein [Mus musculus]	212.0	[0..3]	[114..64]
gi\|40255199, gi\|... - gi\|40255199\|ref\|NP_113665.2\| yippee-like 3 [Homo sapiens], gi\|30047791\|gb\|AAH50664.1\| Yippee-like 3 ...	212.0	[0..3]	[114..90]
gi\|157119876, gi... - gi\|157119876\|ref\|XP_001659550.1\| fad nad binding oxidoreductases [Aedes aegypti], gi\|108883134\|gb\|EA...	205.0	[0..1]	[114..34]
gi\|68365758 - gi\|68365758\|ref\|XP_690346.1\| PREDICTED: similar to Protein yippee-like 1 [Danio rerio]	203.0	[0..3]	[114..8]
gi\|48095962 - gi\|48095962\|ref\|XP_392369.1\| PREDICTED: similar to Protein yippee-like 1 [Apis mellifera] gi\|156553123 - gi\|156553123\|ref\|XP_001600940.1\| PREDICTED: hypothetical protein [Nasonia vitripennis]	202.0	[0..1]	[114..1]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKTFQAYLP STNRTYSCVH CRAHLASHDE LISKSFQGSQ GPAYLFNSVV NVACGQTEER  60
   61 VLLTGLHAVA DIYCECCKTP LGWKYEHAYE SSQKYKEGKF IIELAHMIKE NGWD

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.979
Match:	1zu1A
Description:	Solution Structure of the N-terminal Zinc Fingers of the Xenopus laevis double stranded RNA binding protein ZFa
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits